In 2008 alone, 85,400 cases of acute flaccid paralysis (AFP) were reported from the countries with active poliovirus surveillance programs, of which less than 1,731 (2.03%) were found to be associated with poliovirus infection. Using a metagenomic approach we have discovered a group of highly divergent picornaviruses in children suffering from non-polio AFP. The complete genomes of six new viruses were sequenced and phylogenetic analysis indicated them to be sufficiently divergent from all currently known picornaviruses to form a new genus in the Picornaviridae family. In order to begin testing whether these new viruses, named Human Cosavirus (HCoSV), were a significant pathogen associated with non-polio AFP we tested stool samples from 160 non-polio AFP cases using specific PCR primers. HCoSV RNA was detected in stool samples of 107 AFP cases. High prevalence and high viral load of HCoSV variants in stool samples of multiple AFP children leads us to hypothesize that HCoSV is a human pathogen associated with AFP in children. Initial phylogenetic analysis of HCoSV variants showed the existence of four different viral species within this new Picornaviridae genus. The level of genetic divergence between species of genus Cosavirus was similar to that between species of genus Enterovirus. Further information regarding HCoSV genetic diversity and epidemiology is now required to clarify its pathogenic role in AFP and, if confirmed, for developing strategies to prevent its transmission and disease.
AIM 1 will determine the prevalence of different HCoSV genotypes in samples from a larger number of AFP cases plus demographically matched healthy controls to test whether there is a significant association with AFP, followed by full genome genetic characterization of the most divergent HCoSV variants.
AIM 2 will be the development of a serological assay for HCoSV using virions produced by cell culture or viral capsids derived from baculovirus/insect cell expression.
AIM 3 will determine the prevalence of seroreactivity to HCoSV in AFP cases, in healthy controls and in the general population. This exploratory study of a new human picornavirus genus that we have recently characterized and detected at high frequency in developing countries will therefore provide the foundation for possible steps to relieve the still high health burden imposed by infantile paralytic diseases. Our long-term goal is to define the pathogenic potential of HCoSV and to prevent new infections.

Public Health Relevance

Despite the near eradication of poliovirus, acute flaccid paralysis caused by other viruses still inflicts frequent, severe, and at time permanent damages to children, particularly in developing countries with poor sanitation. No viruses have been identified for over half of the remaining cases of non-polio acute flaccid paralysis. We have identified a new viral group present in nearly half of the non-polio cases of acute flaccid paralysis tested. We wish to perform further tests of this virus'ability to cause disease and establish assays to measure how common this infection is in the general population. If the proposed study confirms this new virus as a significant pathogen it will provide the groundwork for future interventions to prevent its transmission and decrease the burden of infantile acute flaccid paralysis.

National Institute of Health (NIH)
National Institute of Allergy and Infectious Diseases (NIAID)
Exploratory/Developmental Grants (R21)
Project #
Application #
Study Section
Clinical Research and Field Studies of Infectious Diseases Study Section (CRFS)
Program Officer
Park, Eun-Chung
Project Start
Project End
Budget Start
Budget End
Support Year
Fiscal Year
Total Cost
Indirect Cost
Columbia University (N.Y.)
Public Health & Prev Medicine
Schools of Public Health
New York
United States
Zip Code
Kapoor, Amit; Simmonds, Peter; Scheel, Troels K H et al. (2013) Identification of rodent homologs of hepatitis C virus and pegiviruses. MBio 4:e00216-13
Kapoor, Amit; Tesh, Robert B; Duraisamy, Raja et al. (2013) A novel mosquito-borne Orbivirus species found in South-east Asia. J Gen Virol 94:1051-7
Burbelo, Peter D; Ragheb, Jack A; Kapoor, Amit et al. (2013) The serological evidence in humans supports a negligible risk of zoonotic infection from porcine circovirus type 2. Biologicals 41:430-4
Burbelo, Peter D; Dubovi, Edward J; Simmonds, Peter et al. (2012) Serology-enabled discovery of genetically diverse hepaciviruses in a new host. J Virol 86:6171-8
Kapoor, Amit; Dubovi, Edward J; Henriquez-Rivera, Jose Angel et al. (2012) Complete genome sequence of the first canine circovirus. J Virol 86:7018
Kapoor, Amit; Mehta, Natasha; Dubovi, Edward J et al. (2012) Characterization of novel canine bocaviruses and their association with respiratory disease. J Gen Virol 93:341-6
Kapoor, Amit; Simmonds, Peter; Dubovi, Edward J et al. (2011) Characterization of a canine homolog of human Aichivirus. J Virol 85:11520-5