HIV currently affects 35 million people worldwide. Infection occurs by the interaction of the envelope glycoprotein gp120 on the surface of the HIV particle with CD4 and one of two chemokine receptors, CXCR4 or CCR5, on host cells, which promotes viral entry by gp41-mediated fusion of viral and host cell membranes. CCR5-tropic viruses are primarily responsible for initial infection and transmission of the disease, while CXCR4-tropic viruses are correlated with later stage progression to full-blown AIDS. Consequently, since 1981, significant efforts have been deployed to develop potent small molecule, peptide and protein entry inhibitors of HIV coreceptors, and a CCR5 entry inhibitor, Maraviroc, was approved in 2007. The emergence of CXCR4 tropic virus in ~50% percent of infected individuals and its correlation with more rapid decline in CD4+ cell counts and faster progression to the symptomatic stage of AIDS has also encouraged development of CXCR4 inhibitors. Structural information on how gp120 interacts with CXCR4 to enter cells would be highly valued to advance such endeavors, as well as to provide a better understanding of viral entry, tropism and resistance. While structures of gp120 have been solved with other soluble proteins involved in entry of HIV into cells, structural understanding of its interaction with full length chemokine coreceptors is still lacking. This is due to the challenge of determining structures involving membrane proteins, particularly with protein ligands like chemokines and gp120. Recently, we solved the structure of the first complex of CXCR4 with a protein ligand, the viral chemokine vMIP-II. Structures of CXCR4 with the HIV protein ligand, gp120, represent an obvious extension of these studies. Our long term goal is to obtain a structural understanding of CCR5 and CXCR4 interactions with HIV gp120, thus enabling rational design of highly efficient HIV entry inhibitors with reduced susceptibility to development of resistance. The objective of the present proposal is therefore to generate stable complexes of full length CXCR4 with gp120 as a prelude to future structural studies. Our central hypothesis is that gp120 interaction with the co-receptors structurally mimics that of chemokines and is mediated by at least two distinct epitopes. We will focus on binding determinants centered on the tropism determining gp120 V3 loop. Furthermore, we will use a computationally-guided disulfide trap strategy developed in the course of determining the CXCR4:vMIP-II structure to identify disulfides that spontaneously form between non-native cysteines introduced into gp120 and CXCR4 in order to make stable CXCR4:gp120 complexes suitable for structural studies. In the process of doing so, we will determine distance restraints that can be used to model complexes of the interaction, and develop a platform for understanding the tolerance of CXCR4 to gp120 sequence diversity in the context of HIV resistance and tropism. The proposal is innovative in both its challenging objectives and its novel disulfide trap methodology, and it is significant because it will advance the understanding of HIV entry, tropism, resistance and therapeutic design.

Public Health Relevance

The chemokine receptor, CXCR4, plays a critical role in the entry of HIV into cells, and its appearance is associated with a rapid decline in CD4+ cell counts and progression to the symptomatic, immune deficient phase of AIDS. As such, there is an interest in developing CXCR4 inhibitors that prevent entry of CXCR4-tropic HIV strains into cells. In this proposal we seek to develop stable complexes of CXCR4 with gp120 as a prelude to structural studies. The proposed studies will ultimately contribute to the development of CXCR4-targeted entry inhibitors. They will also directly lead to a better understanding of CXCR4-mediated entry of HIV into cells, drug resistance and receptor tropism.

National Institute of Health (NIH)
National Institute of Allergy and Infectious Diseases (NIAID)
Exploratory/Developmental Grants (R21)
Project #
Application #
Study Section
Biochemistry and Biophysics of Membranes Study Section (BBM)
Program Officer
Church, Elizabeth S
Project Start
Project End
Budget Start
Budget End
Support Year
Fiscal Year
Total Cost
Indirect Cost
University of California San Diego
Schools of Pharmacy
La Jolla
United States
Zip Code
Kufareva, Irina; Gustavsson, Martin; Zheng, Yi et al. (2017) What Do Structures Tell Us About Chemokine Receptor Function and Antagonism? Annu Rev Biophys 46:175-198
Zheng, Yi; Han, Gye Won; Abagyan, Ruben et al. (2017) Structure of CC Chemokine Receptor 5 with a Potent Chemokine Antagonist Reveals Mechanisms of Chemokine Recognition and Molecular Mimicry by HIV. Immunity 46:1005-1017.e5
Ngo, Tony; Ilatovskiy, Andrey V; Stewart, Alastair G et al. (2017) Orphan receptor ligand discovery by pickpocketing pharmacological neighbors. Nat Chem Biol 13:235-242
Zong, Chengli; Venot, Andre; Li, Xiuru et al. (2017) Heparan Sulfate Microarray Reveals That Heparan Sulfate-Protein Binding Exhibits Different Ligand Requirements. J Am Chem Soc 139:9534-9543
Kufareva, Irina (2016) Chemokines and their receptors: insights from molecular modeling and crystallography. Curr Opin Pharmacol 30:27-37
Wescott, Melanie P; Kufareva, Irina; Paes, Cheryl et al. (2016) Signal transmission through the CXC chemokine receptor 4 (CXCR4) transmembrane helices. Proc Natl Acad Sci U S A 113:9928-33
Leach, Katie; Gregory, Karen J; Kufareva, Irina et al. (2016) Towards a structural understanding of allosteric drugs at the human calcium-sensing receptor. Cell Res 26:574-92
Zheng, Yi; Qin, Ling; Zacarías, Natalia V Ortiz et al. (2016) Structure of CC chemokine receptor 2 with orthosteric and allosteric antagonists. Nature 540:458-461