Natural Killer (NK) cells play a major role in defense against pathogenic infections and tumors. The 'missing- self' hypothesis that provided a mechanistic framework for NK cell tolerance for more than 20 years has been challenged directly by recent experiments. Thus, a mechanistic understanding of signal integration from a variety of stimulatory and inhibitory receptors leading to NK cell activation and tolerance is lacking. This proposal seeks to produce a new mechanistic framework for understanding NK cell activation by synergistically combining computational approaches rooted in statistical physics, nonlinear dynamics and engineering with wet lab experiments. Genetically engineered human NK cell lines stimulated by mouse cytomegalovirus (CMV) encoded ligands will be used to validate the computational model and test model predictions. This unique experimental system allows us to quantitatively test the computational model with experimental outcomes by precisely controlling the numbers and types of the ligands and receptors. We investigate two overlapping specific aims in the proposal. 1. Determine mechanisms underlying the early time interplay between signals initiated by opposing NK receptors that lead to NK cell activation. We will develop spatially homogeneous computational model describing stochastic kinetics of early time signaling events in NK cells interacting with diverse stimulatory and inhibitory ligands. Model predictions will be tested against wet lab experiments using human NK cell lines. 2. Determine the role of spatial kinetics and clustering of receptors and associated signaling molecules in modulating stimulatory and inhibitory signals leading to NK cell activation. Spatially inhomogeneous stochastic and deterministic simulations combined with imaging and biochemical wet lab experiments using human NK cell lines will be carried out to determine the effect of microscopic clustering and spatial kinetics (diffusion and transport) of receptor-ligand complexes and receptor-bound signaling molecules. At successful completion of the proposed projects, we will have a computational model with predictive capabilities for NK cell activation that will very likely provide strategies for therapeutic interventions against viral infections (such as CMV) and tumors, as well as, create an improved mechanistic framework alternate to the existing missing-self hypothesis.

Public Health Relevance

NK cells provide critical direct resistance against tumors and pathogen infected cells, as well as, influence our adaptive immune response following an infection. However, discovery of successful NK based therapies against infectious diseases and cancer is obstructed due to the lack of understanding regarding how signals are integrated across the wide variety of stimulatory and inhibitory NK cell receptors. Development of the computational model for NK activation with predictive capabilities will very likely provide strategies for therapeutic interventions against viral infections (such as CMV) and tumors.

National Institute of Health (NIH)
National Institute of Allergy and Infectious Diseases (NIAID)
High Priority, Short Term Project Award (R56)
Project #
Application #
Study Section
Modeling and Analysis of Biological Systems Study Section (MABS)
Program Officer
Gondre-Lewis, Timothy A
Project Start
Project End
Budget Start
Budget End
Support Year
Fiscal Year
Total Cost
Indirect Cost
Nationwide Children's Hospital
United States
Zip Code
Das, Jayajit; Khakoo, Salim I (2015) NK cells: tuned by peptide? Immunol Rev 267:214-27
Cassidy, Sorcha; Mukherjee, Sayak; Myint, Thet Mon et al. (2015) Peptide selectivity discriminates NK cells from KIR2DL2- and KIR2DL3-positive individuals. Eur J Immunol 45:492-500
Mukherjee, Sayak; Seok, Sang-Cheol; Vieland, Veronica J et al. (2013) Data-driven quantification of the robustness and sensitivity of cell signaling networks. Phys Biol 10:066002
Das, Jayajit (2013) Positive feedback produces broad distributions in maximum activation attained within a narrow time window in stochastic biochemical reactions. J Chem Phys 138:015101
Mukherjee, Sayak; Zhu, Jing; Zikherman, Julie et al. (2013) Monovalent and multivalent ligation of the B cell receptor exhibit differential dependence upon Syk and Src family kinases. Sci Signal 6:ra1
Joshi, Rohan P; Schmidt, Amanda M; Das, Jayajit et al. (2013) The ? isoform of diacylglycerol kinase plays a predominant role in regulatory T cell development and TCR-mediated ras signaling. Sci Signal 6:ra102
Mukherjee, Sayak; Seok, Sang-Cheol; Vieland, Veronica J et al. (2013) Cell responses only partially shape cell-to-cell variations in protein abundances in Escherichia coli chemotaxis. Proc Natl Acad Sci U S A 110:18531-6