As cancer treatments being evaluated in clinical trials evolve from cytotoxic agents to targeted therapies, there is a pressing need to incorporate new imaging biomarkers, such as those being developed by centers in the Quantitative Imaging Network (QIN), into these trials in order to detect treatment response with better accuracy than current, simple linear measure-based assessments of cancer. Progress has been thwarted, however, by three major challenges: (1) inability of current image assessment tools to compute new imaging biomarkers, due to their closed architectures and lack of support of different programming languages in which biomarker algorithms are developed, (2) lack of decision support tools to assess treatment response in patients or drug effectiveness in clinical trial cohorts using new imaging biomarkers, and (3) lack of approaches to repurpose the vast collections of image data acquired in clinical trials to acquire evidence for qualifying new imaging biomarkers as surrogate endpoints. In this proposal, we will develop a software platform to enable translating novel quantitative imaging biomarkers being developed by the QIN and others into clinical trials, and methods to enable qualifying them. We will evaluate the success of our platform by deploying new imaging biomarkers in two clinical trials in individual sites and in the ECOG-ACRIN cooperative group. To accomplish these goals: (1) We will develop a platform and tools through which to deploy new imaging biomarkers into clinical trials, extending our previously developed Web-based image viewing tool and developing four unique capabilities: a plugin mechanism to execute new quantitative imaging algorithms developed by us or by others in different programming languages, decision support tools for evaluating patient response and treatment effectiveness, and tools that facilitate the workflow of collecting novel imaging biomarkers in clinical trials, that evaluate their benefit over conventional biomarkers, and that collect data which, across clinical trials, will help to qualify them as surrogate endpoints; (2) We will develop methods to repurpose existing imaging data from clinical trials for studying new imaging biomarkers by developing automated image segmentation methods to enable efficient calculation of novel quantitative imaging biomarkers; and (3) We will deploy and evaluate our platform and tools in two cancer centers and the ECOG-ACRIN national cooperative group, and demonstrate their ability to efficiently collect image biomarker data and to facilitate the qualification of new imaging biomarkers. Through the public availability of our platform, its plugin mechanism for introducing new quantitative imaging biomarkers in clinical trials, the intuitive graphical user interfaces for collecting these biomarkers in the image interpretation workflow, the methods for de-centralized coordination and oversight of image interpretation in clinical trials, and the tools for decision support, our developments will serve he needs of the QIN and the broader research community, ultimately accelerating clinical trials and the translation of novel image surrogate biomarkers into clinical practice, which will improve the assessment of patient response to new cancer treatments.

Public Health Relevance

We will produce a software resource and tools that have major relevance for human health, by enabling researchers who are developing novel quantitative imaging biomarkers to incorporate them into clinical trials as surrogate endpoints of treatment response, providing potentially better assessment of response than using existing imaging biomarkers. Our modular, plugin-based software resource and tools will be broadly applicable to the developers of these algorithms as well as to clinical trial researchers, using them for decision support, for repurposing existing clinical trial data to study new image-based biomarkers, and for accumulating aggregate evidence needed to qualify new imaging biomarkers as surrogate endpoints in clinical trials, which will, in turn, greatly accelerate the development and acceptance of new imaging biomarkers as surrogates for assessing cancer treatment.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project--Cooperative Agreements (U01)
Project #
5U01CA190214-05
Application #
9698315
Study Section
Special Emphasis Panel (ZCA1)
Program Officer
Tata, Darayash B
Project Start
2015-06-01
Project End
2021-05-31
Budget Start
2019-06-01
Budget End
2020-05-31
Support Year
5
Fiscal Year
2019
Total Cost
Indirect Cost
Name
Stanford University
Department
Radiation-Diagnostic/Oncology
Type
Schools of Medicine
DUNS #
009214214
City
Stanford
State
CA
Country
United States
Zip Code
94305
Banerjee, Imon; Malladi, Sadhika; Lee, Daniela et al. (2018) Assessing treatment response in triple-negative breast cancer from quantitative image analysis in perfusion magnetic resonance imaging. J Med Imaging (Bellingham) 5:011008
Bakr, Shaimaa; Gevaert, Olivier; Echegaray, Sebastian et al. (2018) A radiogenomic dataset of non-small cell lung cancer. Sci Data 5:180202
Banerjee, Imon; Chen, Matthew C; Lungren, Matthew P et al. (2018) Radiology report annotation using intelligent word embeddings: Applied to multi-institutional chest CT cohort. J Biomed Inform 77:11-20
Gupta, Anupama; Banerjee, Imon; Rubin, Daniel L (2018) Automatic information extraction from unstructured mammography reports using distributed semantics. J Biomed Inform 78:78-86
Echegaray, Sebastian; Bakr, Shaimaa; Rubin, Daniel L et al. (2018) Quantitative Image Feature Engine (QIFE): an Open-Source, Modular Engine for 3D Quantitative Feature Extraction from Volumetric Medical Images. J Digit Imaging 31:403-414
Lam, Carson; Yu, Caroline; Huang, Laura et al. (2018) Retinal Lesion Detection With Deep Learning Using Image Patches. Invest Ophthalmol Vis Sci 59:590-596
Graim, Kiley; Liu, Tiffany Ting; Achrol, Achal S et al. (2017) Revealing cancer subtypes with higher-order correlations applied to imaging and omics data. BMC Med Genomics 10:20
Lekadir, Karim; Galimzianova, Alfiia; Betriu, Angels et al. (2017) A Convolutional Neural Network for Automatic Characterization of Plaque Composition in Carotid Ultrasound. IEEE J Biomed Health Inform 21:48-55
Hoogi, Assaf; Subramaniam, Arjun; Veerapaneni, Rishi et al. (2017) Adaptive Estimation of Active Contour Parameters Using Convolutional Neural Networks and Texture Analysis. IEEE Trans Med Imaging 36:781-791
Bakr, Shaimaa; Echegaray, Sebastian; Shah, Rajesh et al. (2017) Noninvasive radiomics signature based on quantitative analysis of computed tomography images as a surrogate for microvascular invasion in hepatocellular carcinoma: a pilot study. J Med Imaging (Bellingham) 4:041303

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