The schizophrenia research community has invested substantial resources to develop methods to collect, manage and share neuroimaging data, along with other meta-data such as clinical, behavioral, cognitive and genetics data. The exploration and analysis of multi-site, multi-dimensional, multi-modal data has improved our understanding of the relationships among abnormalities of brain circuitry, brain function and genetic variability in schizophrenia, as demonstrated by efforts from multi-site consortiums such as the Functional Biomedical Informatics Research Network (FBIRN) and the Mind Research Network (MRN) Clinical Imaging Consortium (MCIC). However, to draw meaningful conclusions about these complex measures, data from large samples are needed, far more than what would be possible at any individual site. Presently, such large-scale data analysis and discovery in schizophrenia research using data from multiple sources would depend upon the effort of separately obtaining data from different places. Practical challenges related to data sharing due to cost of duplication of data, disparate database architecture and querying are preventing many research teams from being able to participate in state-of-the-art neuroscience research. We propose to create a SchizConnect Mediator as a data mediation and integration platform for establishing a true federation of schizophrenia neuroimaging-related databases to support hypothesis generation and testing, and to deliver a web portal, SchizConnect, to interact with the federated databases. In this approach, information from disparate, heterogeneous databases are queried and integrated in a uniform, semantically- consistent structured manner. To a user or a client program the system appears as a single (virtual) database with a uniform schema/model of the domain, but the data remains at the repositories and under the control of the data providers. We will first test and validate this approach on three large data sets and extend this federation to other data sets in the final year. By bringing information from disparate neuroimaging repositories into a common integrated system, we will provide resources for investigators to conduct unique investigations not addressable at any single site. By integrating existing data sources that are native to their own institutions and heterogeneous in the terminology and modeling constructs, we will enable more schizophrenia researchers to share their already-collected existing data with no changes to their existing data repositories, thus greatly promoting discovery related to the mechanisms underlying schizophrenia, a key NIMH strategic objective.
Large-scale data sharing and integration is needed to further the state-of-the-art schizophrenia research, but is presently not possible due to practical limitations in the way in which data are being shared. We propose a data mediation and integration resource to overcome these limitations in a low-cost manner and deliver a web portal to interact with the federated databases.
|Landis, Drew; Courtney, William; Dieringer, Christopher et al. (2016) COINS Data Exchange: An open platform for compiling, curating, and disseminating neuroimaging data. Neuroimage 124:1084-8|
|Alpert, Kathryn; Kogan, Alexandr; Parrish, Todd et al. (2016) The Northwestern University Neuroimaging Data Archive (NUNDA). Neuroimage 124:1131-6|
|Wright, C; Gupta, C N; Chen, J et al. (2016) Polymorphisms in MIR137HG and microRNA-137-regulated genes influence gray matter structure in schizophrenia. Transl Psychiatry 6:e724|
|Wang, Lei; Alpert, Kathryn I; Calhoun, Vince D et al. (2016) SchizConnect: Mediating neuroimaging databases on schizophrenia and related disorders for large-scale integration. Neuroimage 124:1155-67|
|Kogan, Alex; Alpert, Kathryn; Ambite, Jose Luis et al. (2016) Northwestern University schizophrenia data sharing for SchizConnect: A longitudinal dataset for large-scale integration. Neuroimage 124:1196-201|
|van Erp, T G M; Hibar, D P; Rasmussen, J M et al. (2016) Subcortical brain volume abnormalities in 2028 individuals with schizophrenia and 2540 healthy controls via the ENIGMA consortium. Mol Psychiatry 21:547-53|
|Ambite, Jose Luis; Tallis, Marcelo; Alpert, Kathryn et al. (2015) SchizConnect: Virtual Data Integration in Neuroimaging. Data Integr Life Sci 9162:37-51|
|Patel, Veena S; Kelly, Sinead; Wright, Carrie et al. (2015) MIR137HG risk variant rs1625579 genotype is related to corpus callosum volume in schizophrenia. Neurosci Lett 602:44-9|
|Turner, Jessica A; Pasquerello, Danielle; Turner, Matthew D et al. (2015) Terminology development towards harmonizing multiple clinical neuroimaging research repositories. Data Integr Life Sci 9162:104-117|
|Wright, Carrie; Calhoun, Vince D; Ehrlich, Stefan et al. (2015) Meta gene set enrichment analyses link miR-137-regulated pathways with schizophrenia risk. Front Genet 6:147|
Showing the most recent 10 out of 13 publications