The objectives of Core C are to provide standardized methodologies, protocols, and imaging services to be utilized by each of the four projects. These include: 1) histological sectioning and immunohistochemical staining, 2) bright-field, fluorescent, and multi-spectral image acquisition, 3) image processing and quantitative analysis, and 4) automated data acquisition and spreadsheet formatting. This centralization will facilitate the comparison of immunohistochemical results among different tissues/organs/projects, as well as reduce variability due to diverse staining and imaging procedures. This will be the only such system available at the University of Rochester and will provide a much more sensitive means of discriminating overlapping spectral components in the immunohistochemical sections. In addition, recently developed texture recognition software will be implemented that allows the differentiation and quantification of adjacent tissue types having similar spectral characteristics, based on the inclusion of morphological indices. To facilitate communication among projects. Core C will also develop and oversee two centralized databases;one for the quantitative experimental results, and one for a library of compressed images. These will provide researchers with a comprehensive overview of results from each of the four tissue types.

Public Health Relevance

In view of the fact that early and late effects of radiation on normal tissues have historically been characterized qualitatively or at best, semi-quantitatively, all programs with benefit from the implementation of quantitative image analysis techniques and automated data acquisition. The core will be especially valuable in providing previously unavailable multi-spectral imaging to augment the bright-field and fluorescent capabilities.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Program--Cooperative Agreements (U19)
Project #
5U19AI091036-04
Application #
8513908
Study Section
Special Emphasis Panel (ZAI1-KS-I)
Project Start
Project End
Budget Start
2013-08-01
Budget End
2014-07-31
Support Year
4
Fiscal Year
2013
Total Cost
$226,412
Indirect Cost
$79,867
Name
University of Rochester
Department
Type
DUNS #
041294109
City
Rochester
State
NY
Country
United States
Zip Code
14627
Begolly, Sage; Olschowka, John A; Love, Tanzy et al. (2018) Fractionation enhances acute oligodendrocyte progenitor cell radiation sensitivity and leads to long term depletion. Glia 66:846-861
Dunlap, Micah D; Howard, Nicole; Das, Shibali et al. (2018) A novel role for C-C motif chemokine receptor 2 during infection with hypervirulent Mycobacterium tuberculosis. Mucosal Immunol 11:1727-1742
Howard, Nicole C; Marin, Nancy D; Ahmed, Mushtaq et al. (2018) Mycobacterium tuberculosis carrying a rifampicin drug resistance mutation reprograms macrophage metabolism through cell wall lipid changes. Nat Microbiol 3:1099-1108
Groves, Angela M; Johnston, Carl J; Williams, Jacqueline P et al. (2018) Role of Infiltrating Monocytes in the Development of Radiation-Induced Pulmonary Fibrosis. Radiat Res 189:300-311
Beach, Tyler A; Johnston, Carl J; Groves, Angela M et al. (2017) Radiation induced pulmonary fibrosis as a model of progressive fibrosis: Contributions of DNA damage, inflammatory response and cellular senescence genes. Exp Lung Res 43:134-149
Domingo-Gonzalez, Racquel; Das, Shibali; Griffiths, Kristin L et al. (2017) Interleukin-17 limits hypoxia-inducible factor 1? and development of hypoxic granulomas during tuberculosis. JCI Insight 2:
Judge, Jennifer L; Lacy, Shannon H; Ku, Wei-Yao et al. (2017) The Lactate Dehydrogenase Inhibitor Gossypol Inhibits Radiation-Induced Pulmonary Fibrosis. Radiat Res 188:35-43
Sweet, Tara B; Hurley, Sean D; Wu, Michael D et al. (2016) Neurogenic Effects of Low-Dose Whole-Body HZE (Fe) Ion and Gamma Irradiation. Radiat Res 186:614-623
Moravan, Michael J; Olschowka, John A; Williams, Jacqueline P et al. (2016) Brain radiation injury leads to a dose- and time-dependent recruitment of peripheral myeloid cells that depends on CCR2 signaling. J Neuroinflammation 13:30
Begolly, Sage; Shrager, Peter G; Olschowka, John A et al. (2016) Fractionation Spares Mice From Radiation-Induced Reductions in Weight Gain But Does Not Prevent Late Oligodendrocyte Lineage Side Effects. Int J Radiat Oncol Biol Phys 96:449-457

Showing the most recent 10 out of 65 publications