We propose to create new infrastructure and methods for genomic analysis and apply these to large, complex datasets for type 2 diabetes (T2D), a leading cause of morbidity and mortality that is driven by diverse genetic and environmental factors. This proposal has three primary scientific goals. (1) We will develop infrastructure and analytical tools to harmonize heterogeneous genomic datasets ascertained for the study of complex disease, as demonstrated on DNA sequencing data from over 50,000 individuals;(2) we will design statistical frameworks to identify functional mutations in T2D and analyze their biological consequences, taking advantage of existing data and resources on genetic variation, transcription, and epigenetics;and finally (3) we will democratize access to genomic data by creating user-friendly portals with automated analytical pipelines and intuitive features for data exploration. The software, methods, and web portals we build will help overcome the barriers that currently inhibit the translation of genomic data into biological knowledge and therapeutic insights for T2D.

Public Health Relevance

A major goal of biomedical research is to identify biological processes that underlie human diseases so that safe, effective therapies can be developed more rapidly and cost-effectively. New technology has made it possible to collect large-scale genomic data sets relevant to the genetic and molecular basis of disease, but interpreting this information is difficult due to challenges in accessing the underlying data, assessing its biological implications, and disseminating results so that biomedical researchers and ultimately patients can benefit. We will assemble a multi-disciplinary team to overcome these challenges and create the methods and tools necessary to translate genomic big data into biological understanding, applying these methods and tools specifically to improving our understanding of type 2 diabetes.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Specialized Center--Cooperative Agreements (U54)
Project #
1U54DK105566-01
Application #
8774741
Study Section
Special Emphasis Panel (ZRG1-BST-N (52))
Program Officer
Blondel, Olivier
Project Start
2014-09-30
Project End
2018-08-31
Budget Start
2014-09-30
Budget End
2015-08-31
Support Year
1
Fiscal Year
2014
Total Cost
$2,033,272
Indirect Cost
$623,827
Name
Broad Institute, Inc.
Department
Type
DUNS #
623544785
City
Cambridge
State
MA
Country
United States
Zip Code
02129
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