The primary objective of the Midwest Center for Structural Genomics (MCSG) will be to apply its structure determination pipeline to collaboratively determine the structures of targets nominated by the PSI:Biology Network and the broader biology community. The MCSG will devote a smaller fraction of its effort to contribute, together with its PSI colleagues, to a broader coverage of protein fold space by targeting proteins whose structures would provide the greatest insight into the relationships between sequence and structure. Finally, the MCSG will continue to drive three scientific programs: proteins associated with virulence in human pathogens, proteins overrepresented and associated with disease in human microbiomes and proteins involved in signaling and transcription regulation - areas we are already pursuing in collaboration with leaders in the scientific community. Our long-term goals are to provide high-quality structural models for a large number of biomedically and biologically important proteins and protein families, to overcome structure determination pipeline bottlenecks so that high-throughput (HTP) approaches are amenable to challenging proteins and protein complexes, and to develop advanced protein production methods for these protein families. As part of its mandate, the MCSG will also continue to develop and improve technology, and to refine rapid, highly integrated, and costeffective methods for de novo structure determination by X-ray crystallography using high-efficiency beamlines at third-generation synchrotron sources. Our ultimate goal is to build, together with our PSI colleagues, a foundation for 21st century structural biology where the structures of virtually any protein or protein complex is available to the biology community through the Protein Data Bank (PDB).

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Specialized Center--Cooperative Agreements (U54)
Project #
5U54GM094585-05
Application #
8692864
Study Section
Special Emphasis Panel (ZGM1-CBB-4)
Project Start
Project End
Budget Start
2014-07-01
Budget End
2015-06-30
Support Year
5
Fiscal Year
2014
Total Cost
$4,414,924
Indirect Cost
$1,876,542
Name
University of Chicago
Department
Type
DUNS #
005421136
City
Chicago
State
IL
Country
United States
Zip Code
60637
Michalska, Karolina; Quan Nhan, Dinh; Willett, Julia L E et al. (2018) Functional plasticity of antibacterial EndoU toxins. Mol Microbiol 109:509-527
Kryshtafovych, Andriy; Albrecht, Reinhard; Baslé, Arnaud et al. (2018) Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016). Proteins 86 Suppl 1:27-50
Chang, Chin-Yuan; Lohman, Jeremy R; Huang, Tingting et al. (2018) Structural Insights into the Free-Standing Condensation Enzyme SgcC5 Catalyzing Ester-Bond Formation in the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027. Biochemistry 57:3278-3288
Chang, Chin-Yuan; Yan, Xiaohui; Crnovcic, Ivana et al. (2018) Resistance to Enediyne Antitumor Antibiotics by Sequestration. Cell Chem Biol 25:1075-1085.e4
van den Bosch, Tijs J M; Tan, Kemin; Joachimiak, Andrzej et al. (2018) Functional profiling and crystal structures of isothiocyanate hydrolases found in gut-associated and plant pathogenic bacteria. Appl Environ Microbiol :
Quaile, Andrew T; Stogios, Peter J; Egorova, Olga et al. (2018) The Legionella pneumophila effector Ceg4 is a phosphotyrosine phosphatase that attenuates activation of eukaryotic MAPK pathways. J Biol Chem 293:3307-3320
Xu, Li; Gordon, Ryan; Farmer, Rebecca et al. (2018) Precision therapeutic targeting of human cancer cell motility. Nat Commun 9:2454
Wang, Nan; Rudolf, Jeffrey D; Dong, Liao-Bin et al. (2018) Natural separation of the acyl-CoA ligase reaction results in a non-adenylating enzyme. Nat Chem Biol 14:730-737
Juárez-Vázquez, Ana Lilia; Edirisinghe, Janaka N; Verduzco-Castro, Ernesto A et al. (2017) Evolution of substrate specificity in a retained enzyme driven by gene loss. Elife 6:
Annaval, Thibault; Rudolf, Jeffrey D; Chang, Chin-Yuan et al. (2017) Crystal Structure of Thioesterase SgcE10 Supporting Common Polyene Intermediates in 9- and 10-Membered Enediyne Core Biosynthesis. ACS Omega 2:5159-5169

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