The goal of this project is to analyze various aspects of gene expression in living cells using molecular tools in conjunction with microscopy techniques. A fundamental question in understanding how the mammalian cell nucleus functions and how genes are expressed is what the dynamic properties of nuclear structures and of nuclear proteins are in living cells. We are addressing these issues by generating functional, fluorescently labeled molecules, which can be introduced into cells and visualized in the nucleus of living cells by time-lapse microscopy. Using these methods we have succeeded in visualizing gene expression processes in living cells to study the structure-function relationship of the mammalian cell nucleus. Recently we have initiated studies to measure biophysical properties of proteins in vivo by using photobleaching techniques in conjunction with kinetic modeling and computer simulation approaches. These methods provide powerful tools to analyze for the first time at the molecular level the action of proteins in living cells and in real time We are also interested in the organization of genomes in the interphase cell nucleus. To this end we have initiated studies to map in 3 and 4 dimensions the positioning of chromosomes within the nucleus and we are testing whether positioning of chromosomes affects gene expression and regulation. These studies must be considered first steps towards rigorous interphase cytogenetic methods. Finally, we are using our cell biological approaches to investigate the cellular organization of alternative splicing by investigating the differential association of pre-mRNA splicing factors with alternatively spliced transcripts. We have also initiated a study to apply our knowledge of alternative splice site selection to correct aberrant splicing in human disease genes with the hope to restore normal splicing in a 'RNA-therapy' approach.
| Mathas, Stephan; Kreher, Stephan; Meaburn, Karen J et al. (2009) Gene deregulation and spatial genome reorganization near breakpoints prior to formation of translocations in anaplastic large cell lymphoma. Proc Natl Acad Sci U S A 106:5831-6 |
| Misteli, Tom (2009) Self-organization in the genome. Proc Natl Acad Sci U S A 106:6885-6 |
| Mejat, Alexandre; Decostre, Valerie; Li, Juan et al. (2009) Lamin A/C-mediated neuromuscular junction defects in Emery-Dreifuss muscular dystrophy. J Cell Biol 184:31-44 |
| Pegoraro, Gianluca; Misteli, Tom (2009) The central role of chromatin maintenance in aging. Aging (Albany NY) 1:1017-22 |
| Hager, Gordon L; McNally, James G; Misteli, Tom (2009) Transcription dynamics. Mol Cell 35:741-53 |
| Soutoglou, Evi; Dorn, Jonas F; Sengupta, Kundan et al. (2007) Positional stability of single double-strand breaks in mammalian cells. Nat Cell Biol 9:675-82 |
| Trotman, Lloyd C; Wang, Xinjiang; Alimonti, Andrea et al. (2007) Ubiquitination regulates PTEN nuclear import and tumor suppression. Cell 128:141-56 |
| Soutoglou, Evi; Misteli, Tom (2007) Mobility and immobility of chromatin in transcription and genome stability. Curr Opin Genet Dev 17:435-42 |
| Meaburn, Karen J; Misteli, Tom; Soutoglou, Evi (2007) Spatial genome organization in the formation of chromosomal translocations. Semin Cancer Biol 17:80-90 |
| Kruhlak, Michael; Crouch, Elizabeth E; Orlov, Marika et al. (2007) The ATM repair pathway inhibits RNA polymerase I transcription in response to chromosome breaks. Nature 447:730-4 |
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