of Work: The long-term goal of this project is to understand the fidelity of DNA synthesis by multiprotein DNA replication and repair complexes. This year, progress was made in three areas. We determined the fidelity of DNA synthesis by yeast DNA polymerase epsilon, one of the two major polymerases responsible for replicating the eukaryotic genome. To investigate the role of DNA polymerase epsilon in cells, we determined the influence of a point mutation in the active site of DNA polymerase epsilon on mutation rates in yeast strains with a variety of defects in other replication proteins. We also investigated the roles of yeast DNA polymerases delta and epsilon in polymerization and error correction during translesion synthesis past a thymine dimer, a photoproduct resulting from exposure to sunlight and responsible for the mutagenesis underlying susceptibility to skin cancer. Background: DNA polymerases do not work alone in cells, but function within interconnected DNA processing pathways that require many other proteins to replicate DNA and to repair various types of environmental DNA damage. Some of these proteins determine which substrates a DNA polymerase can copy and/or influence the efficiency and fidelity with which DNA synthesis occurs. Building on our structure-function studies of purified DNA polymerases, the goal of this project is to understand the fidelity of DNA synthesis by multi-protein DNA replication and DNA repair complexes, and to understand how perturbing these complexes may result in genome instability associated with environmental disease. A critical component of this effort is to connect in vi

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES065046-18
Application #
7007432
Study Section
(LMG)
Project Start
Project End
Budget Start
Budget End
Support Year
18
Fiscal Year
2004
Total Cost
Indirect Cost
Name
U.S. National Inst of Environ Hlth Scis
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Kunkel, Thomas A (2004) DNA replication fidelity. J Biol Chem 279:16895-8
McCulloch, Scott D; Kokoska, Robert J; Chilkova, Olga et al. (2004) Enzymatic switching for efficient and accurate translesion DNA replication. Nucleic Acids Res 32:4665-75
Kozmin, Stanislav G; Pavlov, Youri I; Kunkel, Thomas A et al. (2003) Roles of Saccharomyces cerevisiae DNA polymerases Poleta and Polzeta in response to irradiation by simulated sunlight. Nucleic Acids Res 31:4541-52
Matsuda, Toshiro; Vande Berg, Brian J; Bebenek, Katarzyna et al. (2003) The base substitution fidelity of DNA polymerase beta-dependent single nucleotide base excision repair. J Biol Chem 278:25947-51
Pavlov, Youri I; Newlon, Carol S; Kunkel, Thomas A (2002) Yeast origins establish a strand bias for replicational mutagenesis. Mol Cell 10:207-13
Rogozin, Igor B; Kunkel, Thomas A; Pavlov, Youri I (2002) Double-strand breaks in DNA during somatic hypermutation of Ig genes: cause or consequence? Trends Immunol 23:12-3
Pavlov, Youri I; Rogozin, Igor B; Galkin, Alexey P et al. (2002) Correlation of somatic hypermutation specificity and A-T base pair substitution errors by DNA polymerase eta during copying of a mouse immunoglobulin kappa light chain transgene. Proc Natl Acad Sci U S A 99:9954-9
Pavlov, Y I; Nguyen, D; Kunkel, T A (2001) Mutator effects of overproducing DNA polymerase eta (Rad30) and its catalytically inactive variant in yeast. Mutat Res 478:129-39
Pavlov, Y I; Shcherbakova, P V; Kunkel, T A (2001) In vivo consequences of putative active site mutations in yeast DNA polymerases alpha, epsilon, delta, and zeta. Genetics 159:47-64
Jin, Y H; Obert, R; Burgers, P M et al. (2001) The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability. Proc Natl Acad Sci U S A 98:5122-7

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