We have developed a technique called quantitative electron spectroscopic tomography (QuEST) for imaging the three-dimensional distribution of specific chemical elements in cells. A 300 kV field-emission transmission electron microscope (TEM) equipped with an advanced imaging filter is used to collect a series of 2-D elemental maps for a range of specimen tilt angles. Acquisition is controlled by means of flexible computer scripts that enable correction for specimen drift and defocus between successive tilt angles. Projected 2-D elemental distributions are obtained by acquiring images above and below characteristic core-edges in the energy-loss spectrum and by subtracting the extrapolated background intensity at each pixel. We have implemented and tested a dual-axis simultaneous iterative reconstruction technique (SIRT) to reconstruct the 3-D elemental distribution. By applying a thickness correction algorithm that takes into account plural inelastic scattering, and by incorporating scattering cross sections for excitation of core-shell electrons, we have shown that it is possible to quantify the elemental distributions in terms of the number of atoms per voxel. By using correlative light microscopy and 3-D phosphorus imaging, experiments are in progress to map the distribution of DNA in specific domains of cell nuclei, where macromolecular complexes are involved in regulation of genes. We have demonstrated the feasibility of using a dual fluoro-nanogold labeled antibody to image specific proteins contained within the chromatin insulator body complex. The proteins can be tracked in the optical microscope using the fluorescence tag, after which the gold nanoparticle tags can be visualized in 3D using electron tomography in the scanning transmission electron microscope (STEM) mode. Then EFTEM tomography is used to determine the distribution of DNA in the vicinity of the insulator body complex. The application of the QuEST technique is limited by radiation damage, which has the potential to alter the elemental composition as well as the specimen morphology, and we have performed a systematic study to determine the effect of electron dose. Electron tomograms obtained from unstained high-pressure frozen and freeze-substituted sections of Caenorhabditis elegans showed that it is feasible to obtain useful 3D phosphorus and nitrogen maps, and thus to reveal quantitative information about the subcellular distributions of nucleic acids and proteins. This year, a new-generation Gatan Dual EELS imaging filter has been installed on our FEI Tecnai TF30 transmission electron microscope, providing much higher sensitivity for elemental analysis, and greatly improved stability. In particular, the acquisition speed for STEM-EELS is increased by a factor of around 100, making it possible to read out 1,000 spectra each containing more than 1,000 channels in less than one second. The performance of the system is being tested, and comparisons are made between EFTEM and STEM-EELS.

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Support Year
10
Fiscal Year
2016
Total Cost
Indirect Cost
Name
Biomedical Imaging & Bioengineering
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Mayorova, Tatiana D; Smith, Carolyn L; Hammar, Katherine et al. (2018) Cells containing aragonite crystals mediate responses to gravity in Trichoplax adhaerens (Placozoa), an animal lacking neurons and synapses. PLoS One 13:e0190905
Leapman, Richard D (2017) Application of EELS and EFTEM to the life sciences enabled by the contributions of Ondrej Krivanek. Ultramicroscopy 180:180-187
Aronova, Maria A; Leapman, Richard D (2013) Elemental mapping by electron energy loss spectroscopy in biology. Methods Mol Biol 950:209-26
Aronova, M A; Leapman, R D (2012) Development of Electron Energy Loss Spectroscopy in the Biological Sciences. MRS Bull 37:53-62
Lin, Xin; Xie, Jin; Niu, Gang et al. (2011) Chimeric ferritin nanocages for multiple function loading and multimodal imaging. Nano Lett 11:814-9
Xie, Jin; Zhang, Fan; Aronova, Maria et al. (2011) Manipulating the power of an additional phase: a flower-like Au-Fe3O4 optical nanosensor for imaging protease expressions in vivo. ACS Nano 5:3043-51
Aronova, M A; Sousa, A A; Zhang, G et al. (2010) Limitations of beam damage in electron spectroscopic tomography of embedded cells. J Microsc 239:223-32
Fukunaga, Masaki; Li, Tie-Qiang; van Gelderen, Peter et al. (2010) Layer-specific variation of iron content in cerebral cortex as a source of MRI contrast. Proc Natl Acad Sci U S A 107:3834-9
Aronova, M A; Kim, Y C; Pivovarova, N B et al. (2009) Quantitative EFTEM mapping of near physiological calcium concentrations in biological specimens. Ultramicroscopy 109:201-12