We have further tested and developed our new tool of using mass conservation constraints as a form of Bayesian regularization in multi-signal sedimentation velocity. We have confirmed by computer simulations and application to experimental data sets that it can significantly aid in the spectral discrimination of components. We have finished the complex implementation of this approach in the software SEDPHAT. Towards the study of polysaccharides and other macromolecules with relatively broad particle size distribution, we have embarked on a collaboration with Dr. Stephen Harding for the development of new sedimentation equilibrium approaches based on the principles of M-star analysis and on the direct global fitting with integral equations representing size distributions. It is increasingly recognized that ultra-weak interactions may play an important role in the high concentrations of the cellular milieu. Therefore, we initiated a study of exploiting the measurement of hydrodynamic interactions to report on weak macromolecular interactions. We have identified experimental model systems, and are studying the theoretical framework of hydroydamic and thermodynamic non-ideality. In order to summarize and disseminate the new tools developed by us and others in the field of analytical ultracentrifugation, we wrote a comprehensive review for Current Protocols in Protein Science, and conducted two workshops to teach advanced analytical ultracentrifugation methodology.

Project Start
Project End
Budget Start
Budget End
Support Year
6
Fiscal Year
2012
Total Cost
$101,019
Indirect Cost
Name
National Institute of Biomedical Imaging and Bioengineering
Department
Type
DUNS #
City
State
Country
Zip Code
LeBrun, Thomas; Schuck, Peter; Wei, Ren et al. (2018) A radial calibration window for analytical ultracentrifugation. PLoS One 13:e0201529
Chaturvedi, Sumit K; Ma, Jia; Zhao, Huaying et al. (2017) Use of fluorescence-detected sedimentation velocity to study high-affinity protein interactions. Nat Protoc 12:1777-1791
Chaturvedi, Sumit K; Zhao, Huaying; Schuck, Peter (2017) Sedimentation of Reversibly Interacting Macromolecules with Changes in Fluorescence Quantum Yield. Biophys J 112:1374-1382
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Zhao, Huaying; Fu, Yan; Glasser, Carla et al. (2016) Monochromatic multicomponent fluorescence sedimentation velocity for the study of high-affinity protein interactions. Elife 5:
Schuck, Peter (2016) Sedimentation coefficient distributions of large particles. Analyst 141:4400-9
Ma, Jia; Zhao, Huaying; Sandmaier, Julia et al. (2016) Variable Field Analytical Ultracentrifugation: II. Gravitational Sweep Sedimentation Velocity. Biophys J 110:103-12
Ma, Jia; Metrick, Michael; Ghirlando, Rodolfo et al. (2015) Variable-Field Analytical Ultracentrifugation: I. Time-Optimized Sedimentation Equilibrium. Biophys J 109:827-37
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Zhao, Huaying; Ghirlando, Rodolfo; Alfonso, Carlos et al. (2015) A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation. PLoS One 10:e0126420

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