The sole purpose of the germline is to produce gametes-the vehicles of heritable genetic and epigenetic information. In animals, the development and maintenance of a functional germline and gametes requires the activity of PIWI proteins, germline- expressed Argonaut family members that interact with small RNAs known as piRNAs. The best known function for the piRNA pathway is to protect the genome from invading transposable elements, yet most animals encode multiple PIWI genes that interact with distinct classes of piRNAs, suggesting that piRNA pathways have divergent functions even within an organism. Indeed, piRNAs that derive from unique sequences in the genome are abundantly expressed during pachytene in the mouse testis, but whether they promote or simply correlate with sperm development is unclear. These observations raise many important and unresolved questions that are essential to understanding how piRNA pathways promote germline immortality. We propose studies in three model organisms-worms, flies, and mice-to identify the conserved mechanisms and functions of piRNA pathways in animals.

Public Health Relevance

The piRNA pathway has a conserved and essential function in germline development, but the mechanisms that drive piRNA biogenesis and the targets for these small RNAs are not well understood. The proposed studies use coordinated studies in diverse experimental systems to define conserved components and functions for this pathway, which are likely to directly impact human reproductive health.

Agency
National Institute of Health (NIH)
Institute
Eunice Kennedy Shriver National Institute of Child Health & Human Development (NICHD)
Type
Research Program Projects (P01)
Project #
5P01HD078253-04
Application #
9449367
Study Section
Special Emphasis Panel (ZHD1)
Program Officer
Moss, Stuart B
Project Start
2015-03-09
Project End
2020-02-29
Budget Start
2018-03-01
Budget End
2019-02-28
Support Year
4
Fiscal Year
2018
Total Cost
Indirect Cost
Name
University of Massachusetts Medical School Worcester
Department
Anatomy/Cell Biology
Type
Schools of Medicine
DUNS #
603847393
City
Worcester
State
MA
Country
United States
Zip Code
Zhang, Donglei; Tu, Shikui; Stubna, Michael et al. (2018) The piRNA targeting rules and the resistance to piRNA silencing in endogenous genes. Science 359:587-592
Yu, Bowen; Lin, Yu An; Parhad, Swapnil S et al. (2018) Structural insights into Rhino-Deadlock complex for germline piRNA cluster specification. EMBO Rep 19:
Fu, Yu; Yang, Yujing; Zhang, Han et al. (2018) The genome of the Hi5 germ cell line from Trichoplusia ni, an agricultural pest and novel model for small RNA biology. Elife 7:
Gainetdinov, Ildar; Colpan, Cansu; Arif, Amena et al. (2018) A Single Mechanism of Biogenesis, Initiated and Directed by PIWI Proteins, Explains piRNA Production in Most Animals. Mol Cell 71:775-790.e5
Tang, Wen; Seth, Meetu; Tu, Shikui et al. (2018) A Sex Chromosome piRNA Promotes Robust Dosage Compensation and Sex Determination in C. elegans. Dev Cell 44:762-770.e3
Dokshin, Gregoriy A; Ghanta, Krishna S; Piscopo, Katherine M et al. (2018) Robust Genome Editing with Short Single-Stranded and Long, Partially Single-Stranded DNA Donors in Caenorhabditis elegans. Genetics 210:781-787
Fu, Yu; Wu, Pei-Hsuan; Beane, Timothy et al. (2018) Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers. BMC Genomics 19:531
Seth, Meetu; Shirayama, Masaki; Tang, Wen et al. (2018) The Coding Regions of Germline mRNAs Confer Sensitivity to Argonaute Regulation in C. elegans. Cell Rep 22:2254-2264
Ishidate, Takao; Ozturk, Ahmet R; Durning, Daniel J et al. (2018) ZNFX-1 Functions within Perinuclear Nuage to Balance Epigenetic Signals. Mol Cell 70:639-649.e6
Zhang, Gen; Tu, Shikui; Yu, Tianxiong et al. (2018) Co-dependent Assembly of Drosophila piRNA Precursor Complexes and piRNA Cluster Heterochromatin. Cell Rep 24:3413-3422.e4

Showing the most recent 10 out of 17 publications