| Zeng, Haoyang; Edwards, Matthew D; Liu, Ge et al. (2016) Convolutional neural network architectures for predicting DNA-protein binding. Bioinformatics 32:i121-i127 |
| Arbab, Mandana; Sherwood, Richard I (2016) Self-Cloning CRISPR. Curr Protoc Stem Cell Biol 38:5B.5.1-5B.5.16 |
| Hashimoto, Tatsunori; Sherwood, Richard I; Kang, Daniel D et al. (2016) A synergistic DNA logic predicts genome-wide chromatin accessibility. Genome Res 26:1430-1440 |
| Barkal, Amira A; Srinivasan, Sharanya; Hashimoto, Tatsunori et al. (2016) Cas9 Functionally Opens Chromatin. PLoS One 11:e0152683 |
| Arbab, Mandana; Srinivasan, Sharanya; Hashimoto, Tatsunori et al. (2015) Cloning-free CRISPR. Stem Cell Reports 5:908-917 |
| Mahony, Shaun; Edwards, Matthew D; Mazzoni, Esteban O et al. (2014) An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding. PLoS Comput Biol 10:e1003501 |
| Sherwood, Richard I; Hashimoto, Tatsunori; O'Donnell, Charles W et al. (2014) Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape. Nat Biotechnol 32:171-178 |
| Wichterle, Hynek; Gifford, David; Mazzoni, Esteban (2013) Neuroscience. Mapping neuronal diversity one cell at a time. Science 341:726-7 |
| Mazzoni, Esteban O; Mahony, Shaun; Closser, Michael et al. (2013) Synergistic binding of transcription factors to cell-specific enhancers programs motor neuron identity. Nat Neurosci 16:1219-27 |
| Arbab, Mandana; Mahony, Shaun; Cho, Hyunjii et al. (2013) A multi-parametric flow cytometric assay to analyze DNA-protein interactions. Nucleic Acids Res 41:e38 |
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