Breast cancer is one of the leading causes of death in females. Early detection of breast tumors is critical to increasing the survival of women diagnosed with this disease. Accurate computer-aided detection of breast tumors could improve early detection but requires segmentation, a process that provides the precise tumor location, size, boundary, and shape. Existing breast tumor segmentation approaches are sensitive to small changes in image quality (e.g., intensity, contrast, noise, artifacts), limiting their application in early detection of breast cancer. The goal of the proposed project is to overcome current limitations by building tumor segmentation methodologies that are robust to variations of image quality. We will use breast ultrasound images due to the noninvasive, painless, nonradioactive, and cost-effective nature of the imaging procedure. We propose the following specific aims to achieve this goal. (1) Model human breast anatomy. In clinical examination, the knowledge of breast anatomy helps radiologists distinguish between breast tissues. In this aim, we will develop a graphical model to represent the spatial relationship of different breast layers and to help distinguish tumor regions from normal regions. We will develop a new mathematical tool called tissue connectedness for modeling breast anatomy in ultrasound images. Tissue connectedness allows for the identification of different breast tissues and helps distinguish a breast tumor from normal tumor-like regions (e.g., artifacts, fat). (2) Model the visual saliency of breast tumors. Visual saliency is a property that makes an object in images stand out from neighboring objects. We will overcome the invalid assumption made in previous approaches that there is at least one tumor in the image by developing a robust model for estimating visual saliency of breast tumors. With the help of this model, we will detect all possible tumor regions that would attract a radiologist?s attention, with no output of salient regions when no tumor exists in an image. (3) Develop a domain-enriched deep learning framework for tumor segmentation. A deep learning-based framework will be developed to integrate the output of models from Aims 1 and 2 and will lead to an overall model that segments breast tumors. We will train and test the approach using 1800 breast ultrasound images from four medical schools collected using five different ultrasound devices. Seven quantitative metrics will be applied to evaluate the performance of the proposed segmentation approach. Discrepancies between computational and manual tumor segmentation will be used to refine the models. Success of the proposed project will enhance methodologies for robust and reproducible breast ultrasound image segmentation and broaden the use of computer-aided diagnosis for early detection of breast cancer.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Exploratory Grants (P20)
Project #
2P20GM104420-06A1
Application #
10026003
Study Section
Special Emphasis Panel (ZGM1)
Project Start
Project End
Budget Start
2020-07-01
Budget End
2021-06-30
Support Year
6
Fiscal Year
2020
Total Cost
Indirect Cost
Name
University of Idaho
Department
Type
DUNS #
075746271
City
Moscow
State
ID
Country
United States
Zip Code
83844
Baumgaertner, Bert O; Fetros, Peter A; Krone, Stephen M et al. (2018) Spatial opinion dynamics and the effects of two types of mixing. Phys Rev E 98:022310
Garry, Daniel J; Ellington, Andrew D; Molineux, Ian J et al. (2018) Viral attenuation by engineered protein fragmentation. Virus Evol 4:vey017
Bull, James J; Christensen, Kelly A; Scott, Carly et al. (2018) Phage-Bacterial Dynamics with Spatial Structure: Self Organization around Phage Sinks Can Promote Increased Cell Densities. Antibiotics (Basel) 7:
Patel, Jagdish Suresh; Brown, Celeste J; Ytreberg, F Marty et al. (2018) Predicting peak spectral sensitivities of vertebrate cone visual pigments using atomistic molecular simulations. PLoS Comput Biol 14:e1005974
Patel, Jagdish Suresh; Ytreberg, F Marty (2018) Fast Calculation of Protein-Protein Binding Free Energies Using Umbrella Sampling with a Coarse-Grained Model. J Chem Theory Comput 14:991-997
Buzbas, Erkan Ozge; Verdu, Paul (2018) Inference on admixture fractions in a mechanistic model of recurrent admixture. Theor Popul Biol 122:149-157
Ferguson, Jake M; Buzbas, Erkan Ozge (2018) Inference from the stationary distribution of allele frequencies in a family of Wright-Fisher models with two levels of genetic variability. Theor Popul Biol 122:78-87
Suchar, Vasile A; Aziz, Noha; Bowe, Amanda et al. (2018) An Exploration of the Spatiotemporal and Demographic Patterns of Ebola Virus Disease Epidemic in West Africa Using Open Access Data Sources. Appl Geogr 90:272-281
Dutta, Rabijit; Xing, Tao; Swanson, Craig et al. (2018) Comparison of flow and gas washout characteristics between pressure control and high-frequency percussive ventilation using a test lung. Physiol Meas 39:035001
Li, Longze; Vakanski, Aleksandar (2018) Generative Adversarial Networks for Generation and Classification of Physical Rehabilitation Movement Episodes. Int J Mach Learn Comput 8:428-436

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