The Morris Cotton Cancer Center (NCCC) Bioinformatics Shared Resource (BISR) has operated as a core facility since 2002. The BISR was developed within the NCCC as a resource to meet the bioinformatics needs of the NCCC but has expanded to provide services to the entire Dartmouth research community. Bioinformatics plays a central role in modern cancer research through the storage, management, retrieval, and computational analysis of biomedical data. However, the successful application of bioinformatics requires a combination of advanced computing infrastructure and a highly trained technical staff with expertise in computer programming, databases, and software engineering. Combining the specialized staff and infrastructure into a central core facility provides the cancer researcher access to critical bioinformatics services and intellectual support. The economy of scale of a centralized core facility for bioinformatics support yields tremendous cost-savings and more efficient data analysis for the individual investigator who may not have the resources or expertise to provide computational support in their own lab. The BISR has been significantly strengthened and expanded over the past three years with new leadership, new personnel, and new computing infrastructure to provide state-of-the-art bioinformatics support, including computer programming, database design and development, data-mining, high-performance computing, and software engineering. This core collaborates very closely with the Biostatistics, Genomics, Molecular Biology, and Proteomics Shared Services as a component of the Integrative Biology Group to provide coordinated support for the investigator applying these expertise and tools for genomic-level analyses. We have successfully established an effective mechanism to provide the latest bioinformatics applications for all high-throughput datasets from the NCCC community, and the overall goal of this core facility is to continue to provide NCCC researchers with state-of-the-art technical support and services for their cancer research, at as low a rate as possible, so that they can continue to meet their research objectives in whatever direction their hypotheses and results may lead.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Center Core Grants (P30)
Project #
5P30CA023108-33
Application #
8255527
Study Section
Subcommittee G - Education (NCI)
Project Start
Project End
Budget Start
2010-12-01
Budget End
2011-11-30
Support Year
33
Fiscal Year
2011
Total Cost
$94,851
Indirect Cost
Name
Dartmouth College
Department
Type
DUNS #
041027822
City
Hanover
State
NH
Country
United States
Zip Code
03755
Gacerez, Albert T; Sentman, Charles L (2018) T-bet promotes potent antitumor activity of CD4+ CAR T cells. Cancer Gene Ther 25:117-128
Yang, Wei; Schwartz, Gary N; Marotti, Jonathan D et al. (2018) Estrogen receptor alpha drives mTORC1 inhibitor-induced feedback activation of PI3K/AKT in ER+ breast cancer. Oncotarget 9:8810-8822
Andrew, Angeline S; Chen, Celia Y; Caller, Tracie A et al. (2018) Toenail mercury Levels are associated with amyotrophic lateral sclerosis risk. Muscle Nerve :
Zhao, Yanding; Varn, Frederick S; Cai, Guoshuai et al. (2018) A P53-Deficiency Gene Signature Predicts Recurrence Risk of Patients with Early-Stage Lung Adenocarcinoma. Cancer Epidemiol Biomarkers Prev 27:86-95
Lyons, Kathleen Doyle; Newman, Robin; Adachi-Mejia, Anna M et al. (2018) Content Analysis of a Participant-Directed Intervention to Optimize Activity Engagement of Older Adult Cancer Survivors. OTJR (Thorofare N J) 38:38-45
Anderson, Joseph C; Butterly, Lynn F; Robinson, Christina M et al. (2018) Risk of Metachronous High-Risk Adenomas and Large Serrated Polyps in Individuals With Serrated Polyps on Index Colonoscopy: Data From the New Hampshire Colonoscopy Registry. Gastroenterology 154:117-127.e2
Gacerez, Albert T; Hua, Casey K; Ackerman, Margaret E et al. (2018) Chimeric antigen receptors with human scFvs preferentially induce T cell anti-tumor activity against tumors with high B7H6 expression. Cancer Immunol Immunother 67:749-759
Onega, T; Zhu, W; Weiss, J E et al. (2018) Preoperative breast MRI and mortality in older women with breast cancer. Breast Cancer Res Treat 170:149-157
Vergo, Maxwell T; Pinkson, Briane M; Broglio, Kathleen et al. (2018) Immediate Symptom Relief After a First Session of Massage Therapy or Reiki in Hospitalized Patients: A 5-Year Clinical Experience from a Rural Academic Medical Center. J Altern Complement Med 24:801-808
Varn, Frederick S; Schaafsma, Evelien; Wang, Yue et al. (2018) Genomic Characterization of Six Virus-Associated Cancers Identifies Changes in the Tumor Immune Microenvironment and Altered Genetic Programs. Cancer Res 78:6413-6423

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