- Genomics Core Genomic technologies have broadly impacted vision science and have a crifical role in most ofthe research programs carried out at Mass Eye and Ear. The Genomics core provides access to state-of- the-art genomic resources at low cost. Direct access to the Genomics core resources and expertise makes it possible for investigators to efficiently obtain high-quality data and eliminates the long queues for services such as next-generation sequencing frequently experienced at off-site centers. Importantly, the expert Genomics core personnel can help investigators plan appropriate experiments and assist with analyses (including troubleshooting)-services that would not be readily available elsewhere. The efficient timeline for data acquisition increases the overall productivity of the core investigators as well as improves the quality of the research. Genomic data is an important feature of many of the MEEI research programs and is especially important for the translational studies. The Genomics core personnel are experts in the genetics and genomics of eye disease, creating opportunities for collaboration among investigators using this resource. Overall direct access to Genomics core personnel and resources greatly enhances the quality of the research and ultimate accomplishments of the core investigators. The Genomics core is directed by Dr. Eric Pierce, an expert in the genetics and genomics of inherited ocular disease. Services provided by the Genomics core includes: Sanger sequencing, whole exome sequencing, selective exon capture and next generation sequencing (NGS) for ocular disease genes (RetNeT, glaucoma, optic neuropathy, mitochondrial DNA), genome-wide genotyping (both common and rare variation), copy number variation (CNV) using array CGH (comparative genomic hybridization), high-density genotypes and MLPA (multiplex ligation-dependent probe amplification), and RNA sequencing (RNA-seq) for transcriptome analyses.

Agency
National Institute of Health (NIH)
Institute
National Eye Institute (NEI)
Type
Center Core Grants (P30)
Project #
2P30EY014104-16
Application #
9795870
Study Section
Special Emphasis Panel (ZEY1)
Project Start
2002-09-01
Project End
2024-08-31
Budget Start
2019-09-01
Budget End
2020-06-30
Support Year
16
Fiscal Year
2019
Total Cost
Indirect Cost
Name
Massachusetts Eye and Ear Infirmary
Department
Type
DUNS #
073825945
City
Boston
State
MA
Country
United States
Zip Code
02114
Fernandez-Godino, Rosario; Pierce, Eric A (2018) C3a triggers formation of sub-retinal pigment epithelium deposits via the ubiquitin proteasome pathway. Sci Rep 8:9679
Zhu, Ying; Pappas, Anthony C; Wang, Rui et al. (2018) Ultrastructural Morphology of the Optic Nerve Head in Aged and Glaucomatous Mice. Invest Ophthalmol Vis Sci 59:3984-3996
Struebing, Felix L; King, Rebecca; Li, Ying et al. (2018) Genomic loci modulating retinal ganglion cell death following elevated IOP in the mouse. Exp Eye Res 169:61-67
Gharahkhani, Puya; Burdon, Kathryn P; Cooke Bailey, Jessica N et al. (2018) Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma. Sci Rep 8:3124
Bispo, Paulo J M; Davoudi, Samaneh; Sahm, Matthew L et al. (2018) Rapid Detection and Identification of Uveitis Pathogens by Qualitative Multiplex Real-Time PCR. Invest Ophthalmol Vis Sci 59:582-589
Paschalis, Eleftherios I; Lei, Fengyang; Zhou, Chengxin et al. (2018) Microglia Regulate Neuroglia Remodeling in Various Ocular and Retinal Injuries. J Immunol :
Jamshidi, Farzad; Place, Emily M; Mehrotra, Sudeep et al. (2018) Contribution of noncoding pathogenic variants to RPGRIP1-mediated inherited retinal degeneration. Genet Med :
Lee, Jeong Yoon; Lee, Ji Sun; Materne, Emma C et al. (2018) Bacterial RecA Protein Promotes Adenoviral Recombination during In Vitro Infection. mSphere 3:
Kosmidou, Cassandra; Efstathiou, Nikolaos E; Hoang, Mien V et al. (2018) Issues with the Specificity of Immunological Reagents for NLRP3: Implications for Age-related Macular Degeneration. Sci Rep 8:461
Ismail, Ashrafali M; Lee, Ji Sun; Lee, Jeong Yoon et al. (2018) Adenoviromics: Mining the Human Adenovirus Species D Genome. Front Microbiol 9:2178

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