Research Area I: Assembly of Host-Microbe Systems. We will advance the fundamental understanding of the processes that govern the assembly of host-microbe systems by analyzing how ecological pressures such as bacterial competition and host innate immunity shape community phylogenetic structures.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Specialized Center (P50)
Project #
1P50GM098911-01A1
Application #
8509915
Study Section
Special Emphasis Panel (ZGM1-CBCB-3 (SB))
Project Start
2012-09-17
Project End
2017-08-31
Budget Start
2012-09-17
Budget End
2013-08-31
Support Year
1
Fiscal Year
2012
Total Cost
$326,171
Indirect Cost
$98,221
Name
University of Oregon
Department
Type
DUNS #
948117312
City
Eugene
State
OR
Country
United States
Zip Code
97403
Massaquoi, Michelle S; Guillemin, Karen (2018) Evolving in a Microbial Soup: You Are What They Eat. Dev Cell 47:682-683
Logan, Savannah L; Dudley, Christopher; Baker, Ryan P et al. (2018) Automated high-throughput light-sheet fluorescence microscopy of larval zebrafish. PLoS One 13:e0198705
Fahimipour, Ashkaan K; Hartmann, Erica M; Siemens, Andrew et al. (2018) Daylight exposure modulates bacterial communities associated with household dust. Microbiome 6:175
Parthasarathy, Raghuveer (2018) Monitoring microbial communities using light sheet fluorescence microscopy. Curr Opin Microbiol 43:31-37
Hay, Edouard A; Parthasarathy, Raghuveer (2018) Performance of convolutional neural networks for identification of bacteria in 3D microscopy datasets. PLoS Comput Biol 14:e1006628
Stagaman, Keaton; Cepon-Robins, Tara J; Liebert, Melissa A et al. (2018) Market Integration Predicts Human Gut Microbiome Attributes across a Gradient of Economic Development. mSystems 3:
Troll, Joshua V; Hamilton, M Kristina; Abel, Melissa L et al. (2018) Microbiota promote secretory cell determination in the intestinal epithelium by modulating host Notch signaling. Development 145:
Robinson, Catherine D; Klein, Helena S; Murphy, Kyleah D et al. (2018) Experimental bacterial adaptation to the zebrafish gut reveals a primary role for immigration. PLoS Biol 16:e2006893
Miller, Elizabeth Theresa; Svanbäck, Richard; Bohannan, Brendan J M (2018) Microbiomes as Metacommunities: Understanding Host-Associated Microbes through Metacommunity Ecology. Trends Ecol Evol 33:926-935
Burns, A R; Watral, V; Sichel, S et al. (2018) Transmission of a common intestinal neoplasm in zebrafish by cohabitation. J Fish Dis 41:569-579

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