Abstract

Funds are requested for the fabrication of computational hardware and software powerful enough to support the Bioinformatics analysis pipelines, which includes, processing, analyzing, storing, backing up, maintaining, and sharing of the data generated from high-throughput sequencing

  Funding Agency

Agency
National Institute of Health (NIH)
Institute
National Human Genome Research Institute (NHGRI)
Type
Specialized Center (P50)
Project #
1P50HG007735-01
Application #
8914809
Study Section
Ethical, Legal, Social Implications Review Committee (GNOM)
Program Officer
Pazin, Michael J
Project Start
2014-09-01
Project End
2019-06-30
Budget Start
2014-09-01
Budget End
2015-03-31
Support Year
1
Fiscal Year
2014
Total Cost
Indirect Cost

  Institution

Name
Stanford University
Department
Type
DUNS #
City
Stanford
State
CA
Country
United States
Zip Code
94304

  Publications

Zhang, Wei; Bojorquez-Gomez, Ana; Velez, Daniel Ortiz et al. (2018) A global transcriptional network connecting noncoding mutations to changes in tumor gene expression. Nat Genet 50:613-620
Rubin, Adam J; Parker, Kevin R; Satpathy, Ansuman T et al. (2018) Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks. Cell :
Zhou, Bo; Arthur, Joseph G; Ho, Steve S et al. (2018) Extensive and deep sequencing of the Venter/HuRef genome for developing and benchmarking genome analysis tools. Sci Data 5:180261
Duren, Zhana; Chen, Xi; Zamanighomi, Mahdi et al. (2018) Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations. Proc Natl Acad Sci U S A 115:7723-7728
Gate, Rachel E; Cheng, Christine S; Aiden, Aviva P et al. (2018) Genetic determinants of co-accessible chromatin regions in activated T cells across humans. Nat Genet 50:1140-1150
Prazsák, István; Tombácz, Dóra; Sz?cs, Attila et al. (2018) Full Genome Sequence of the Western Reserve Strain of Vaccinia Virus Determined by Third-Generation Sequencing. Genome Announc 6:
Boyle, Evan A; Pritchard, Jonathan K; Greenleaf, William J (2018) High-resolution mapping of cancer cell networks using co-functional interactions. Mol Syst Biol 14:e8594
Tombácz, Dóra; Sharon, Donald; Sz?cs, Attila et al. (2018) Transcriptome-wide survey of pseudorabies virus using next- and third-generation sequencing platforms. Sci Data 5:180119
Cho, Seung Woo; Xu, Jin; Sun, Ruping et al. (2018) Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element. Cell 173:1398-1412.e22
Oláhová, Monika; Yoon, Wan Hee; Thompson, Kyle et al. (2018) Biallelic Mutations in ATP5F1D, which Encodes a Subunit of ATP Synthase, Cause a Metabolic Disorder. Am J Hum Genet 102:494-504

Showing the most recent 10 out of 117 publications