Recent experiments have shown that old assumptions about the equal contributions of the maternal and paternal genomes are incorrect and that for important genes, only one of the parental alleles is normally expressed. This phenomenon is called genomic imprinting because one of the parental alleles has presumably been marked by a biochemical imprint. Imprinting may account for the fact that some genetic diseases may occur more often if the gene is inherited from the father than from the mother or vice versa. Not only is imprinting required for normal development, but the failure of the imprinting process for some genes may lead to a proclivity for oncogenesis. Imprinted genes are frequently involved in the regulation of cell growth. Thus, it is likely that alterations in the imprinting process may lead to aberrant growth and development. Imprinting is a plastic phenomenon which demonstrates promoter, tissue, and developmental specificities.
The Specific Aims of this grant are as follows: 1. Our goal is to understand the mechanisms underlying the coordinate yet reciprocal imprinting of the contiguous insulin-like growth factor-II (Igf2) and H19 genes in normal tissues and during development. To this end, we have developed a model based on our discovery of a putative imprinting maintenance element upstream of Igf2 which regulates both Igf2 and H19 imprinting. We plan to test this model using in vitro as well as in vivo transgenic systems. 2. To understand the plasticity of the imprinting process, we have chosen to study Igf2, a gene which is imprinted in a promoter-specific, tissue-specific, and development-specific manner. We will compare Igf2 expression in the central nervous system, a tissue which uniquely expresses Igf2 biallelically from all four promoters, with its expression from other tissues in which it is always imprinted. In particular, we will examine how DNA methylation, histone acetylation and antisense regulate the expression of this imprinted gene.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
5R01DK036054-12
Application #
6517095
Study Section
Mammalian Genetics Study Section (MGN)
Program Officer
Sato, Sheryl M
Project Start
1986-07-01
Project End
2004-03-31
Budget Start
2002-07-01
Budget End
2004-03-31
Support Year
12
Fiscal Year
2002
Total Cost
$230,078
Indirect Cost
Name
Stanford University
Department
Internal Medicine/Medicine
Type
Schools of Medicine
DUNS #
800771545
City
Stanford
State
CA
Country
United States
Zip Code
94305
Li, Tao; Hu, Ji-Fan; Qiu, Xinwen et al. (2008) CTCF regulates allelic expression of Igf2 by orchestrating a promoter-polycomb repressive complex 2 intrachromosomal loop. Mol Cell Biol 28:6473-82
Qiu, Xinwen; Vu, Thanh H; Lu, Qiucheng et al. (2008) A complex deoxyribonucleic acid looping configuration associated with the silencing of the maternal Igf2 allele. Mol Endocrinol 22:1476-88
Chen, Theresa L; Shen, Wen-Jun; Qiu, Xin-Wen et al. (2007) Generation of novel adipocyte monolayer cultures from embryonic stem cells. Stem Cells Dev 16:371-80
Ling, Jian Qun; Hoffman, Andrew R (2007) Epigenetics of long-range chromatin interactions. Pediatr Res 61:11R-16R
Hoffman, Andrew R; Hu, Ji Fan (2006) Directing DNA methylation to inhibit gene expression. Cell Mol Neurobiol 26:425-38
Chen, Hui Ling; Li, Tao; Qiu, Xin Wen et al. (2006) Correction of aberrant imprinting of IGF2 in human tumors by nuclear transfer-induced epigenetic reprogramming. EMBO J 25:5329-38
Ling, Jian Qun; Li, Tao; Hu, Ji Fan et al. (2006) CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1. Science 312:269-72
Li, Tao; Vu, Thanh H; Ulaner, Gary A et al. (2005) IVF results in de novo DNA methylation and histone methylation at an Igf2-H19 imprinting epigenetic switch. Mol Hum Reprod 11:631-40
Vu, Thanh H; Li, Tao; Hoffman, Andrew R (2004) Promoter-restricted histone code, not the differentially methylated DNA regions or antisense transcripts, marks the imprinting status of IGF2R in human and mouse. Hum Mol Genet 13:2233-45
Yao, Xiaoming; Hu, Ji-Fan; Daniels, Mark et al. (2003) A methylated oligonucleotide inhibits IGF2 expression and enhances survival in a model of hepatocellular carcinoma. J Clin Invest 111:265-73

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