The aim of this research is to study in detail how a group of four regulatory proteins of Saccharomyces cerevisiae control the expression of genes in a position dependent manner. Specifically there are silent copies of the mating type locus genes of Saccharomyces cerevisiae that are not expressed due to the products of the four SIR genes. These silent copies serve as a source of genetic information that is transposed to the mating type locus when cells switch from one mating type to another. In addition, the mechanism by which these proteins enter the nucleus after being synthesized in the cytoplasm will be studied. The position effect experiments will entail a genetic analysis of mutants that fail to repress the silent mating type loci. Extragenic suppressors of these mutations will be studied in order to learn how the four proteins interact to control these loci and what the mechanism of this regulation is. Entry of proteins into the nucleus will be studied by selecting mutants that block entry of a foreign endonuclease into the nucleus. The medical significance of this work is two fold. With the opportunity for gene therapy rapidly approaching, it will be important to understand how the location of a gene can influence the expression of that gene. The entry of proteins into the nucleus is significant because all proteins involved in replicating DNA and transcribing genes must enter the nucleus. Furthermore, the oncogene products from some tumor viruses exert their influence after entering the nucleus. It will be important to identify the routes of nuclear entry before we can evaluate the possibility of regulating it.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM031105-07
Application #
3279027
Study Section
Genetics Study Section (GEN)
Project Start
1982-07-01
Project End
1990-06-30
Budget Start
1988-07-01
Budget End
1989-06-30
Support Year
7
Fiscal Year
1988
Total Cost
Indirect Cost
Name
University of California Berkeley
Department
Type
Schools of Arts and Sciences
DUNS #
094878337
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Sieverman, Kathryn J; Rine, Jasper (2018) Impact of Homologous Recombination on Silent Chromatin in Saccharomyces cerevisiae. Genetics 208:1099-1113
Janke, Ryan; King, Grant A; Kupiec, Martin et al. (2018) Pivotal roles of PCNA loading and unloading in heterochromatin function. Proc Natl Acad Sci U S A 115:E2030-E2039
Janke, Ryan; Iavarone, Anthony T; Rine, Jasper (2017) Oncometabolite D-2-Hydroxyglutarate enhances gene silencing through inhibition of specific H3K36 histone demethylases. Elife 6:
McCleary, David F; Rine, Jasper (2017) Nutritional Control of Chronological Aging and Heterochromatin in Saccharomyces cerevisiae. Genetics 205:1179-1193
Schlissel, Gavin; Krzyzanowski, Marek K; Caudron, Fabrice et al. (2017) Aggregation of the Whi3 protein, not loss of heterochromatin, causes sterility in old yeast cells. Science 355:1184-1187
Dodson, Anne E; Rine, Jasper (2016) Donor Preference Meets Heterochromatin: Moonlighting Activities of a Recombinational Enhancer in Saccharomyces cerevisiae. Genetics 204:1065-1074
Ellahi, Aisha; Rine, Jasper (2016) Evolution and Functional Trajectory of Sir1 in Gene Silencing. Mol Cell Biol 36:1164-79
McCleary, David F; Steakley, David Lee; Rine, Jasper (2016) Sir protein-independent repair of dicentric chromosomes in Saccharomyces cerevisiae. Mol Biol Cell 27:2879-83
Liu, Tzu-Yu; Dodson, Anne E; Terhorst, Jonathan et al. (2016) Riches of phenotype computationally extracted from microbial colonies. Proc Natl Acad Sci U S A 113:E2822-31
Steakley, David Lee; Rine, Jasper (2015) On the Mechanism of Gene Silencing in Saccharomyces cerevisiae. G3 (Bethesda) 5:1751-63

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