Regulated membrane fusion is essential to many cell processes and to the life cycle of lipid-sheathed viruses such as HIV, Influenza, and Ebola. Several proteins (""""""""fusion machines"""""""") involved in neurotransmitter release and enveloped viral infection have been identified and characterized structurally. Still, how these proteins catalyze fusion is not fully understood. The Lentz lab studies lipid rearrangements associated with fusion between synthetic membranes. The approach is first to define these rearrangements in pure lipid systems and then to ask how fusion proteins might promote them. Fusion requires close contact between membranes, which is induced using the inert polymer poly(ethylene glycol) (PEG). Fusion between lipid vesicles aggregated by PEG is shown to be minimally a three-step process (contacted bilayers D """"""""stalk"""""""" intermediate D """"""""diaphragm"""""""" intermediate D pore) that mimics biomembrane fusion. The Lentz group calculated, using the mechanical properties of lamellar lipid phases, the free energy reaction profile of this """"""""stalk"""""""" fusion mechanism and showed it to be consistent with their unique studies effusion kinetics. Experiments and calculations show that the free energies of bent lipid monolayers and of defects between non-lamellar and lamellar structures (hydrophobic interstices) dominate the fusion process. Most researchers have focused on the bending energy to explain fusion. The Central Hypothesis is that fusion proteins catalyze fusion not just by altering bending energy but also in good measure by stabilizing hydrophobic interstices. To test this hypothesis, the project will address seven Specific Aims: 1] Compare the abilities of different bend-inducing lipids to partition into or promote bent lipid structures, and 2] alter the fusion reaction mechanism;3] Determine whether an infection-blocking mutation in the membrane spanning domain of HIV alters the structure of a synthetic membrane spanning domain peptide, alters membrane structure, and alters the effect of this peptide on fusion;4] Determine whether mutations in a key region of Influenza virus (the """"""""fusion"""""""" peptide) alter a} the structure of a synthetic fusion peptide, b} membrane structure, and c} the effect of this peptide on fusion;5] Determine whether neurotransmitter- release-blocking mutations in the membrane-spanning region of a neuronal fusion protein (syntaxin) alter a} the structure of a synthetic membrane spanning domain peptide, b} membrane structure, and c} the effect of this peptide on fusion;6] Determine by electron microscopy whether fusion pores form at the point of contact between membranes held in contact by neuronal fusion proteins;and 7] Determine the ability of a neuronal calcium-binding protein (synaptotagmin) to perturb, and trigger fusion between, model membranes brought

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM032707-24
Application #
7893100
Study Section
Special Emphasis Panel (ZRG1-BCMB-B (02))
Program Officer
Chin, Jean
Project Start
1983-12-01
Project End
2013-06-30
Budget Start
2010-07-01
Budget End
2013-06-30
Support Year
24
Fiscal Year
2010
Total Cost
$322,324
Indirect Cost
Name
University of North Carolina Chapel Hill
Department
Biochemistry
Type
Schools of Medicine
DUNS #
608195277
City
Chapel Hill
State
NC
Country
United States
Zip Code
27599
Tarafdar, Pradip K; Chakraborty, Hirak; Bruno, Michael J et al. (2015) Phosphatidylserine-Dependent Catalysis of Stalk and Pore Formation by Synaptobrevin JMR-TMD Peptide. Biophys J 109:1863-72
Sengupta, Tanusree; Chakraborty, Hirak; Lentz, Barry R (2014) The transmembrane domain peptide of vesicular stomatitis virus promotes both intermediate and pore formation during PEG-mediated vesicle fusion. Biophys J 107:1318-26
Chakraborty, Hirak; Sengupta, Tanusree; Lentz, Barry R (2014) pH Alters PEG-mediated fusion of phosphatidylethanolamine-containing vesicles. Biophys J 107:1327-38
Chakraborty, Hirak; Tarafdar, Pradip K; Klapper, David G et al. (2013) Wild-type and mutant hemagglutinin fusion peptides alter bilayer structure as well as kinetics and activation thermodynamics of stalk and pore formation differently: mechanistic implications. Biophys J 105:2495-506
Tenchov, Boris G; MacDonald, Robert C; Lentz, Barry R (2013) Fusion peptides promote formation of bilayer cubic phases in lipid dispersions. An x-ray diffraction study. Biophys J 104:1029-37
Chakraborty, Hirak; Tarafdar, Pradip K; Lentz, Barry R (2013) A novel assay for detecting fusion pore formation: implications for the fusion mechanism. Biochemistry 52:8510-7
Majumder, Rinku; Koklic, Tilen; Rezaie, Alireza R et al. (2013) Phosphatidylserine-induced factor Xa dimerization and binding to factor Va are competing processes in solution. Biochemistry 52:143-51
Tarafdar, Pradip K; Chakraborty, Hirak; Dennison, S Moses et al. (2012) Phosphatidylserine inhibits and calcium promotes model membrane fusion. Biophys J 103:1880-9
Chakraborty, Hirak; Lentz, Barry R (2012) A simple method for correction of circular dichroism spectra obtained from membrane-containing samples. Biochemistry 51:1005-8
Majumder, Rinku; Liang, Xiaoe; Quinn-Allen, Mary Ann et al. (2011) Modulation of prothrombinase assembly and activity by phosphatidylethanolamine. J Biol Chem 286:35535-42

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