Specific chromatin structural changes are associated with the transcriptional activation of the adult Beta-globin gene in developing chick erythrocytes. These changes include the appearance of nuclease hypersensitive sites in the 5' promoter and 3' enhancer regions. Each region interacts with a complex of specific proteins whose composition appears to be tissue-specific and developmentally regulated. Erythrocyte extracts containing these proteins can confer nuclease hyersensitivity on histone- assembled Beta-globin genes in vitro. In this proposal, experiments are designed to study the function of these sequence-specific DNA binding proteins to further our understanding of Beta-globin gene activation. First, the proteins will be analyzed in an in vitro transcription system to test their effect on Beta-globin gene expression. Using partially purified factors and genes deleted in portions of the 5' and 3' control regions, it should be possible to identify those proteins required for transcription. Secondly, a similar analysis will be conducted on reconstituted Beta-globin genes to identify and factors that allow the gene to be transcribed when associated with histones. In this way, factors acting at the level of transcription can be distinguished from those that modify chromatin structure to facilitate transcription from histone-repressed genes. How the two types of factors function together to produce an active chromatin template is the focus of this proposal. The role of nuclease hypersensitivity in transcription will also be examined using histone-reconstituted templates. These studies should provide insight into how the binding of specific proteins can alter chromatin structure to activate a developmentally regulated gene. Such information is relevant to the processes involved in abnormal gene expression which is characteristic of many human diseases.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM038760-02
Application #
3295407
Study Section
Molecular Biology Study Section (MBY)
Project Start
1987-07-01
Project End
1990-06-30
Budget Start
1988-07-01
Budget End
1989-06-30
Support Year
2
Fiscal Year
1988
Total Cost
Indirect Cost
Name
Salk Institute for Biological Studies
Department
Type
DUNS #
005436803
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Witcher, Michael; Emerson, Beverly M (2009) Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary. Mol Cell 34:271-84
Kaeser, Matthias D; Aslanian, Aaron; Dong, Meng-Qiu et al. (2008) BRD7, a novel PBAF-specific SWI/SNF subunit, is required for target gene activation and repression in embryonic stem cells. J Biol Chem 283:32254-63
Ling, Jianhua; Baibakov, Boris; Pi, Wenhu et al. (2005) The HS2 enhancer of the beta-globin locus control region initiates synthesis of non-coding, polyadenylated RNAs independent of a cis-linked globin promoter. J Mol Biol 350:883-96
Zhang, W; Kadam, S; Emerson, B M et al. (2001) Site-specific acetylation by p300 or CREB binding protein regulates erythroid Kruppel-like factor transcriptional activity via its interaction with the SWI-SNF complex. Mol Cell Biol 21:2413-22
Bagga, R; Michalowski, S; Sabnis, R et al. (2000) HMG I/Y regulates long-range enhancer-dependent transcription on DNA and chromatin by changes in DNA topology. Nucleic Acids Res 28:2541-50
Bagga, R; Armstrong, J A; Emerson, B M (1998) Role of chromatin structure and distal enhancers in tissue-specific transcriptional regulation in vitro. Cold Spring Harb Symp Quant Biol 63:569-76
Armstrong, J A; Bieker, J J; Emerson, B M (1998) A SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional regulation by EKLF in vitro. Cell 95:93-104
Armstrong, J A; Emerson, B M (1996) NF-E2 disrupts chromatin structure at human beta-globin locus control region hypersensitive site 2 in vitro. Mol Cell Biol 16:5634-44
Barton, M C; Emerson, B M (1994) Regulated expression of the beta-globin gene locus in synthetic nuclei. Genes Dev 8:2453-65
Barton, M C; Madani, N; Emerson, B M (1993) The erythroid protein cGATA-1 functions with a stage-specific factor to activate transcription of chromatin-assembled beta-globin genes. Genes Dev 7:1796-809

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