The goal of this work is to understand at the molecular level the mechanisms of mother cell specific transcriptional regulation in Saccharomyces cerevisiae. The yeast HO gene is transcribe only in mother cells, one of the two cell types descending from each mitotic division. An analogy can be drawn between this lineage specificity in HO expression and the differential gene regulation which occurs during embryonic development. Two genes, SWI5 and SIN3, have been identified as determining the mother cell specificity of HO expression. SWI5 and SIN3 are positive and negative, respectively, transcriptional regulators. SWI5 encodes a phosphorylated transcriptional activator which binds to the HO promoter. Another DNA-binding protein called """"""""R"""""""", a possible repressor, has been identified binding adjacent to the SW15 binding site. This DNA-binding activity is absent in extracts prepared from sin3- mutants. We plan to analyze the interactions of these two proteins with DNA and with each other to understand the mechanisms underlying differential HO expression in mothers and daughters. We have demonstrated that SIN3 does not encode R. Our data indicates that R is absent in extracts prepared from sin3- mutants because it is bound by an inhibitor protein. We believe that SIN3 regulates the in vitro DNA-binding activity of R by sequestering the inhibitor. This mechanism of regulation of DNA-binding activity by protein-protein interactions may prove to be common, and we plan to determine how SIN3 regulates DNA-binding proteins. An additional objective is to determine how SWI5 and SIN3 fit into the global regulatory network of the cell. We have identified other yeast promoters regulated by SW15 and have obtained evidence that SIN3 acts as a regulator of sugar metabolism.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM039067-04
Application #
3295891
Study Section
Molecular Biology Study Section (MBY)
Project Start
1988-02-01
Project End
1995-01-31
Budget Start
1991-02-01
Budget End
1992-01-31
Support Year
4
Fiscal Year
1991
Total Cost
Indirect Cost
Name
University of Utah
Department
Type
Schools of Medicine
DUNS #
City
Salt Lake City
State
UT
Country
United States
Zip Code
84112
Yarrington, Robert M; Goodrum, Jenna M; Stillman, David J (2016) Nucleosomes Are Essential for Proper Regulation of a Multigated Promoter in Saccharomyces cerevisiae. Genetics 202:551-63
Yu, Yaxin; Yarrington, Robert M; Chuong, Edward B et al. (2016) Disruption of promoter memory by synthesis of a long noncoding RNA. Proc Natl Acad Sci U S A 113:9575-80
Yarrington, Robert M; Rudd, Jared S; Stillman, David J (2015) Spatiotemporal cascade of transcription factor binding required for promoter activation. Mol Cell Biol 35:688-98
Zapata, Jessica; Dephoure, Noah; Macdonough, Tracy et al. (2014) PP2ARts1 is a master regulator of pathways that control cell size. J Cell Biol 204:359-76
Parnell, Emily J; Yu, Yaxin; Lucena, Rafael et al. (2014) The Rts1 regulatory subunit of PP2A phosphatase controls expression of the HO endonuclease via localization of the Ace2 transcription factor. J Biol Chem 289:35431-7
Voth, Warren P; Takahata, Shinya; Nishikawa, Joy L et al. (2014) A role for FACT in repopulation of nucleosomes at inducible genes. PLoS One 9:e84092
Tantin, Dean; Voth, Warren P; Shakya, Arvind (2013) Efficient chromatin immunoprecipitation using limiting amounts of biomass. J Vis Exp :e50064
Stillman, David J (2013) Dancing the cell cycle two-step: regulation of yeast G1-cell-cycle genes by chromatin structure. Trends Biochem Sci 38:467-75
Zhang, Qian; Yoon, Youngdae; Yu, Yaxin et al. (2013) Stochastic expression and epigenetic memory at the yeast HO promoter. Proc Natl Acad Sci U S A 110:14012-7
Stillman, David J (2010) Nhp6: a small but powerful effector of chromatin structure in Saccharomyces cerevisiae. Biochim Biophys Acta 1799:175-80

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