Interactions between proteins play crucial roles in biology. Over- or under-expression of specific proteins can lead to aberrant interaction levels that contribute to disease. In addition, many pathogens depend on protein-protein interactions for infection. Thus, developing tools that lead to new inhibitors of specific protein-protein interactions, or molecules that can substitute for a missing or under- expressed partner, is a goal of considerable importance. Such molecules can serve as powerful tools for elucidating the biological functions of particular interactions, and they can provide the basis for new therapeutic agents. The proposed research is intended to generate new strategies for creating molecules that bind tightly to recognition surfaces displayed by natural proteins, surfaces that evolved to form specific contacts with other proteins or large peptides. The compounds we seek could disrupt deleterious protein associations or boost inadequate interaction levels. Currrent approaches to these goals are based on small molecules, engineered proteins or medium-sized conventional peptides (i.e., peptides comprised exclusively of -amino acid residues). Although these approaches can be successful, each has limitations. For example, small molecules often cannot cover enough surface area on a given protein for effective inhibition of association with a large partner protein. Proteins engineered for therapeutic applications can be expensive to produce and store, and longterm use can provoke a deleterious immune response. Medium-sized conventional peptides are often degraded rapidly by proteases in vivo. Our approach is intended to complement these existing strategies for generating molecules that bind to specific surfaces on target proteins. We focus on oligomers that contain both - and -amino acid residue ("""""""" / -peptides""""""""). Our recent work shows that / -peptides containing 25- 33% residues interspersed evenly among the residues can be highly resistant to proteolysis. In addition, we have found that residues with a specific cyclic constraint can strongly stabilize an - helix-like conformation. One aspect of the proposed research involves a search for alternative residue constraints that match non-helical local conformations commonly adopted by -amino acid residues in folded proteins. This goal is being pursued via a combination of experimental and computational methods, in the context of inhibiting the association of a soluble signaling protein with its cell-surface receptors. Another aspect of the proposed research focuses on new agonists for B- family GPCRs. These studies allow us to determine whether / -peptide analogues of natural agonists can display functional selectivity in their interactions with the target receptors (""""""""biased agonism""""""""). The over-arching goal of this program is to develop broadly applicable design strategies that can be implemented in many laboratories and that will be useful for many biomedically important protein-protein interactions.

Public Health Relevance

Specific interactions between proteins are essential for normal physiology, but aberrant protein interaction patterns can lead to human disease. We are conducting fundamental studies that should lead to a new strategy for preventing deleterious protein associations, or for augmenting interactions that are insufficient. Thus, although the proposed studies are very basic, this research could lay the foundation for development of new types of medicines.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM056414-16A1
Application #
8631602
Study Section
Synthetic and Biological Chemistry B Study Section (SBCB)
Program Officer
Smith, Ward
Project Start
1997-09-01
Project End
2018-01-31
Budget Start
2014-04-01
Budget End
2015-01-31
Support Year
16
Fiscal Year
2014
Total Cost
$301,538
Indirect Cost
$92,189
Name
University of Wisconsin Madison
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
161202122
City
Madison
State
WI
Country
United States
Zip Code
53715
Eddinger, Geoffrey A; Gellman, Samuel H (2018) Differential Effects of ?3 - versus ?2 -Amino Acid Residues on the Helicity and Recognition Properties of Bim BH3-Derived ?/?-Peptides. Angew Chem Int Ed Engl 57:13829-13832
Hager, Marlies V; Clydesdale, Lachlan; Gellman, Samuel H et al. (2017) Characterization of signal bias at the GLP-1 receptor induced by backbone modification of GLP-1. Biochem Pharmacol 136:99-108
Checco, James W; Gellman, Samuel H (2017) Iterative Nonproteinogenic Residue Incorporation Yields ?/?-Peptides with a Helix-Loop-Helix Tertiary Structure and High Affinity for VEGF. Chembiochem 18:291-299
Cheloha, Ross W; Chen, Bingming; Kumar, Niyanta N et al. (2017) Development of Potent, Protease-Resistant Agonists of the Parathyroid Hormone Receptor with Broad ? Residue Distribution. J Med Chem 60:8816-8833
Checco, James W; Gellman, Samuel H (2016) Targeting recognition surfaces on natural proteins with peptidic foldamers. Curr Opin Struct Biol 39:96-105
Hager, Marlies V; Johnson, Lisa M; Wootten, Denise et al. (2016) ?-Arrestin-Biased Agonists of the GLP-1 Receptor from ?-Amino Acid Residue Incorporation into GLP-1 Analogues. J Am Chem Soc 138:14970-14979
Cheloha, Ross W; Watanabe, Tomoyuki; Dean, Thomas et al. (2016) Backbone Modification of a Parathyroid Hormone Receptor-1 Antagonist/Inverse Agonist. ACS Chem Biol 11:2752-2762
Checco, James W; Kreitler, Dale F; Thomas, Nicole C et al. (2015) Targeting diverse protein-protein interaction interfaces with ?/?-peptides derived from the Z-domain scaffold. Proc Natl Acad Sci U S A 112:4552-7
Cheloha, Ross W; Gellman, Samuel H; Vilardaga, Jean-Pierre et al. (2015) PTH receptor-1 signalling-mechanistic insights and therapeutic prospects. Nat Rev Endocrinol 11:712-24
Checco, James W; Lee, Erinna F; Evangelista, Marco et al. (2015) ?/?-Peptide Foldamers Targeting Intracellular Protein-Protein Interactions with Activity in Living Cells. J Am Chem Soc 137:11365-75

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