The broad, long-term objective of this proposal is to elucidate the molecular mechanisms governing oxygen sensing, heme signaling and chaperone action in eukaryotes. Oxygen is vital for maintaining critical cellular functions in many living organisms, and heme is central to oxygen sensing and utilization. In humans, defects in oxygen sensing and regulation or in heme synthesis cause serious diseases in humans, including cancers, porphyrias, and respiratory and hematological diseases. Thus, understanding how oxygen is sensed and how heme and molecular chaperones promote oxygen and global gene regulation is important for improving human health. This proposal uses yeast as a model system for investigating oxygen sensing, heme signaling and chaperone action in eukaryotes. In yeast, heme mediates oxygen regulation of many genes by controlling the transcriptional activity of the heme activator protein Hapl. Molecular chaperones Hsp90 and Hsp70 bind to Hapl and promote heme regulation of Hapl activity. Experiments in this proposal will rigorously test the following hypotheses: (1) Hapl-multichaperone complexes bind directly to DNA and promote transcriptional aactivation and repression; (2) the oxygen level is sensed through heme synthesis; and (3) heme and Hapl play key roles in global oxygen sensing and global transcription regulation.
The specific aims are (1) to clarify and compare the molecular mechanisms by which Hapl activates and represses transcription, (2) to dissect the molecular mechanism by which intracellular heme level is linked to oxygen level, and (3) to determine the global roles of heme and Hapl in oxygen sensing and regulation. Biochemical, genetic, and advanced microarray technologies and computational algorithms will be used to accomplish these aims. The gained knowledge should facilitate the understanding of the molecular mechanisms of oxygen sensing, heme signaling and chaperone action in higher eukaryotes.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM062246-10
Application #
7431705
Study Section
Molecular Genetics B Study Section (MGB)
Program Officer
Anderson, Richard A
Project Start
2002-06-01
Project End
2012-05-31
Budget Start
2008-06-01
Budget End
2012-05-31
Support Year
10
Fiscal Year
2008
Total Cost
$352,527
Indirect Cost
Name
University of Texas-Dallas
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
800188161
City
Richardson
State
TX
Country
United States
Zip Code
75080
Shah, Ajit N; Cadinu, Daniela; Henke, R Michael et al. (2011) Deletion of a subgroup of ribosome-related genes minimizes hypoxia-induced changes and confers hypoxia tolerance. Physiol Genomics 43:855-72
Henke, Robert Michael; Dastidar, Ranita Ghosh; Shah, Ajit et al. (2011) Hypoxia elicits broad and systematic changes in protein subcellular localization. Am J Physiol Cell Physiol 301:C913-28
Lee, Hee Chul; Zhang, Li (2009) A unique mechanism of chaperone action: heme regulation of Hap1 activity involves separate control of repression and activation. Protein Pept Lett 16:642-9
Kundaje, Anshul; Xin, Xiantong; Lan, Changgui et al. (2008) A predictive model of the oxygen and heme regulatory network in yeast. PLoS Comput Biol 4:e1000224
Xin, Xiantong; Lan, Changgui; Lee, Hee Chul et al. (2007) Regulation of the HAP1 gene involves positive actions of histone deacetylases. Biochem Biophys Res Commun 362:120-5
Hon, Thomas; Lee, Hee Chul; Hu, Zhanzhi et al. (2005) The heme activator protein Hap1 represses transcription by a heme-independent mechanism in Saccharomyces cerevisiae. Genetics 169:1343-52
Lan, Changgui; Lee, Hee Chul; Tang, Shan et al. (2004) A novel mode of chaperone action: heme activation of Hap1 by enhanced association of Hsp90 with the repressed Hsp70-Hap1 complex. J Biol Chem 279:27607-12
Hon, Thomas; Dodd, Athena; Dirmeier, Reinhard et al. (2003) A mechanism of oxygen sensing in yeast. Multiple oxygen-responsive steps in the heme biosynthetic pathway affect Hap1 activity. J Biol Chem 278:50771-80
Lee, Hee Chul; Hon, Thomas; Lan, Changgui et al. (2003) Structural environment dictates the biological significance of heme-responsive motifs and the role of Hsp90 in the activation of the heme activator protein Hap1. Mol Cell Biol 23:5857-66