Caspases are the cysteine proteases that control apoptotic cell death. If caspases can be activated, cancer cells die;conversely inhibiting caspases could prevent cell death in diseases like heart attack and stroke. Thus there has been significant interest in caspases as drug targets. This interest was heightened when caspase-6 was discovered to play a central role in neurodegenerative diseases. Unfortunately, to date, no caspase-directed therapies are on the market, primarily because work has focused on targeting the active site, which is the most overlapping and conserved region of the family. It is becoming increasingly clear that each caspase is regulated in a unique and complex manner so the most promising avenue for achieving caspase-specific inhibition may be by harnessing allosteric sites. In order to target a specific caspase or group of caspases allosterically, it is essential to understand the differences between individual caspases and the similarities within subgroups in the caspase family. Thus, the goal of this project is understand how phosphorylation and zinc contribute to regulation of caspase activity. Understanding the roles of phosphorylation or zinc binding alone provides critical information about natural regulatory processes for each member of the apoptotic caspases. Together these sites highlight key sensitive regions that allow strategic control of caspase function. Caspases are extensively phosphorylated. Most phosphorylation events lead to inactivation of caspase function. Our first approach uses methods we have developed for structural analysis of phosphomimetic and phosphorylated versions of caspases. These structures uncover the mechanism by which phosphorylation prevents caspase activity and also identify key regions of conformational control, which are functional allosteric sites. Second, various caspases can be inhibited by zinc, which has also been linked to apoptosis and Alzheimer's Disease. We are applying anomalous x-ray diffraction experiments to identify and characterize novel zinc-binding sites in caspases. Both of these approaches: phosphorylation and zinc-binding have helped us previously to identify new allosteric sites in caspases. By systematically applying these approaches, we can comprehensively map allosteric sites that are used across the caspase family as well as unique sites that are found only on one particular caspase. Our approaches are designed to provide the molecular details of allosteric control as well as assess the biological relevance of these mechanisms. The comparative map of caspase allostery by phosphorylation and zinc binding that we are generating will enable us to select the most appropriate regulatory sites for optimal control of caspase function and for effective treatment of diseases that involve caspases.

Public Health Relevance

Caspases are important potential drug targets because they control whether cells live or die by apoptosis and are also critical factors in neurodegeneration. A full understanding of their regulation at a structural level is essential for controlling individual members or subsets of the caspase family for treatment of cancer and neurodegeneration. The goal of this project is to obtain a map of how zinc and phosphorylation regulate caspases allosterically to enable these means of regulation to be exploited therapeutically. Revised Aims Budget Justification The submitted budget for the renewal of the NIH grant 2 R01 GM080532-06A1 was $250,000 direct costs. Upon funding notification, the budget was cut by the sponsor (NIH) by 31% ($77,000) to $173,000 direct costs. Due to this level of budget cut, I have prepared and am submitting to NIH revised specific aims that cut the scope of the proposed work by approximately 31%. In the revised budget, I have cut all budget categories by approximately 31%. This includes my summer salary (J. Hardy, PI) which was originally submitted as 2.0 months. The new budget reflects a cut of approximately 31% to 1.3 months of summer salary.

National Institute of Health (NIH)
National Institute of General Medical Sciences (NIGMS)
Research Project (R01)
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Macromolecular Structure and Function E Study Section (MSFE)
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Gerratana, Barbara
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University of Massachusetts Amherst
Schools of Arts and Sciences
United States
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Serrano, Banyuhay P; Hardy, Jeanne A (2018) Phosphorylation by protein kinase A disassembles the caspase-9 core. Cell Death Differ 25:1025-1039
Eron, Scott J; MacPherson, Derek J; Dagbay, Kevin B et al. (2018) Multiple Mechanisms of Zinc-Mediated Inhibition for the Apoptotic Caspases-3, -6, -7, and -8. ACS Chem Biol 13:1279-1290
Huber, Kristen L; Serrano, Banyuhay P; Hardy, Jeanne A (2018) Caspase-9 CARD?:?core domain interactions require a properly formed active site. Biochem J 475:1177-1196
Eron, Scott J; Raghupathi, Kishore; Hardy, Jeanne A (2017) Dual Site Phosphorylation of Caspase-7 by PAK2 Blocks Apoptotic Activity by Two Distinct Mechanisms. Structure 25:27-39
Dagbay, Kevin B; Hardy, Jeanne A (2017) Multiple proteolytic events in caspase-6 self-activation impact conformations of discrete structural regions. Proc Natl Acad Sci U S A 114:E7977-E7986
Dagbay, Kevin B; Bolik-Coulon, Nicolas; Savinov, Sergey N et al. (2017) Caspase-6 Undergoes a Distinct Helix-Strand Interconversion upon Substrate Binding. J Biol Chem 292:4885-4897
Serrano, Banyuhay P; Szydlo, Hannah S; Alfandari, Dominique et al. (2017) Active site-adjacent phosphorylation at Tyr-397 by c-Abl kinase inactivates caspase-9. J Biol Chem 292:21352-21365
Dagbay, Kevin B; Hill, Maureen E; Barrett, Elizabeth et al. (2017) Tumor-Associated Mutations in Caspase-6 Negatively Impact Catalytic Efficiency. Biochemistry 56:4568-4577
Wu, Y; Lindblad, J L; Garnett, J et al. (2016) Genetic characterization of two gain-of-function alleles of the effector caspase DrICE in Drosophila. Cell Death Differ 23:723-32
Hill, Maureen E; MacPherson, Derek J; Wu, Peng et al. (2016) Reprogramming Caspase-7 Specificity by Regio-Specific Mutations and Selection Provides Alternate Solutions for Substrate Recognition. ACS Chem Biol 11:1603-12

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