The germ line is essential for reproduction and the perpetuation of species; yet little is known about the molecular mechanisms that first distinguish germ cells from all other embryonic cells (somatic cells). The long-term goal of this proposal is to define these mechanisms using the genetic model system Caenorhabditis elegans. In this transparent worm, the germ cells arise from asymmetrically dividing precursors (germline blastomeres) during the first 2 hours of development. This proposal focuses on three evolutionarily conserved mechanisms essential for the establishment of the germline. The first mechanism involves asymmetric partitioning of maternal proteins to the nascent germline. In the previous funding period, we showed that CCCH finger proteins (putative RNA binding proteins) are targeted for degradation in somatic blastomeres by a novel E3 ubiquitin ligase, which recognizes CCCH fingers. CCCH proteins become asymmetrically distributed in germ line blastomeres before each asymmetric division, and we hypothesize that this asymmetry also results from localized protein degradation. We will test this hypothesis using a combination of transgenic studies and time-lapse analyses in live embryos. The second mechanism involves global inhibition of mRNA transcription in germline blastomeres by the CCCH finger protein PIE-1. Our previous work suggests that PIE-1 inhibits a kinase that phosphorylates the carboxy-terminal domain of RNA polymerase II. We will test this hypothesis by determining the activity in vivo of PIE-1 mutants and PIE-1 interacting proteins. The third mechanism involves translational activation of nanos RNA in primordial germ cells. Nanos is essential for primordial germ cell development, and our initial studies indicate that CCCH proteins regulate nanos expression by controlling both RNA stability and translational status. We will test this hypothesis using structure/function studies in vivo to define the functional and physical interactions connecting the CCCH proteins to the nanos 3'UTR (3' untranslated region). These studies will provide insights into basic developmental processes, including asymmetric partitioning of proteins and RNAs, transcriptional repression, translational regulation, and the control of germ cell fate. As our previous studies indicate, the many conserved characteristics between C. elegans and vertebrate germ cells make likely that principles gathered in this simple model will be applicable to other animals, including humans.

Agency
National Institute of Health (NIH)
Institute
Eunice Kennedy Shriver National Institute of Child Health & Human Development (NICHD)
Type
Research Project (R01)
Project #
5R01HD037047-09
Application #
7232406
Study Section
Reproductive Biology Study Section (REB)
Program Officer
Tasca, Richard J
Project Start
1999-08-01
Project End
2009-05-31
Budget Start
2007-06-01
Budget End
2008-05-31
Support Year
9
Fiscal Year
2007
Total Cost
$272,326
Indirect Cost
Name
Johns Hopkins University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
001910777
City
Baltimore
State
MD
Country
United States
Zip Code
21218
Housden, Benjamin E; Muhar, Matthias; Gemberling, Matthew et al. (2017) Loss-of-function genetic tools for animal models: cross-species and cross-platform differences. Nat Rev Genet 18:24-40
Paix, Alexandre; Folkmann, Andrew; Goldman, Daniel H et al. (2017) Precision genome editing using synthesis-dependent repair of Cas9-induced DNA breaks. Proc Natl Acad Sci U S A 114:E10745-E10754
Lee, Chih-Yung Sean; Lu, Tu; Seydoux, Geraldine (2017) Nanos promotes epigenetic reprograming of the germline by down-regulation of the THAP transcription factor LIN-15B. Elife 6:
Mok, Calvin A; Au, Vinci; Thompson, Owen A et al. (2017) MIP-MAP: High-Throughput Mapping of Caenorhabditis elegans Temperature-Sensitive Mutants via Molecular Inversion Probes. Genetics 207:447-463
Smith, Jarrett; Calidas, Deepika; Schmidt, Helen et al. (2016) Spatial patterning of P granules by RNA-induced phase separation of the intrinsically-disordered protein MEG-3. Elife 5:
Paix, Alexandre; Schmidt, Helen; Seydoux, Geraldine (2016) Cas9-assisted recombineering in C. elegans: genome editing using in vivo assembly of linear DNAs. Nucleic Acids Res 44:e128
McEwen, Tamara J; Yao, Qiuming; Yun, Sijung et al. (2016) Small RNA in situ hybridization in Caenorhabditis elegans, combined with RNA-seq, identifies germline-enriched microRNAs. Dev Biol 418:248-257
Paix, Alexandre; Folkmann, Andrew; Rasoloson, Dominique et al. (2015) High Efficiency, Homology-Directed Genome Editing in Caenorhabditis elegans Using CRISPR-Cas9 Ribonucleoprotein Complexes. Genetics 201:47-54
Wang, Jennifer T; Smith, Jarrett; Chen, Bi-Chang et al. (2014) Regulation of RNA granule dynamics by phosphorylation of serine-rich, intrinsically disordered proteins in C. elegans. Elife 3:e04591
Paix, Alexandre; Wang, Yuemeng; Smith, Harold E et al. (2014) Scalable and versatile genome editing using linear DNAs with microhomology to Cas9 Sites in Caenorhabditis elegans. Genetics 198:1347-56

Showing the most recent 10 out of 29 publications