Statistical atlases, and associated image analysis methods, have found widespread use in several neuroimaging fields, presenting a powerful way to integrate diverse imaging information, correlate it with genetic and clinical measurements, understand effects of disease on brain structure and function, and construct diagnostic tools. This proposal will combine statistical image analysis, deformable registration, and biophysical modeling approaches to an integrated framework for constructing and clinically using statistical atlases from brain tumor patients. Emphasis is placed on gliomas, which have very poor prognosis due to cancer infiltration beyond the visible tumor boundary. Accordingly, the ultimate clinical goal of this study is to identify subtle imaging characteristics of brain tissue that is likely to be infiltrated by tumor, as well as of tissue that is likely to present recurrence in relatively shorter time period. This will be achieved by studying the multi-modal imaging phenotypes of healthy and pathologic tissues in conjunction with spatial information, including the spatial pattern of the tumor and the proximity of malignant tissue to white matter fiber pathways, and by correlating these phenotypes with clinical information, including tumor recurrence. The hypothesis is that signal and spatial information together will be able to identify brain tissues that are likely to later present recurrence. The main technical challenges that will be overcome are 1) development of computationally efficient biophysical models of tumor growth, diffusion, and mass effect;2) development of deformable registration methods that will allow us to co-register tumor-bearing brain images and build a population-based atlas-the main challenges here are to estimate the appropriate tumor parameters as well as the location of peri-tumor anatomy that is typically confounded by edema, infiltration and extreme deformations;and 3) development of machine learning methods for characterizing subtle abnormalities of brain tissue, and for identifying tissue that is likely to present recurrence after resection and treatment. Pilot studies on the feasibility of this approach to larger clinical studies will be performed on a database of brain MR images obtained from glioma patients via a rich and extensive acquisition protocol, including perfusion, diffusion tensor imaging, spectroscopy, and conventional imaging.

Agency
National Institute of Health (NIH)
Institute
National Institute of Neurological Disorders and Stroke (NINDS)
Type
Research Project (R01)
Project #
5R01NS042645-10
Application #
8230636
Study Section
Biomedical Imaging Technology Study Section (BMIT)
Program Officer
Fountain, Jane W
Project Start
2002-06-01
Project End
2014-01-31
Budget Start
2012-02-01
Budget End
2014-01-31
Support Year
10
Fiscal Year
2012
Total Cost
$337,641
Indirect Cost
$123,266
Name
University of Pennsylvania
Department
Radiation-Diagnostic/Oncology
Type
Schools of Medicine
DUNS #
042250712
City
Philadelphia
State
PA
Country
United States
Zip Code
19104
Rathore, Saima; Akbari, Hamed; Rozycki, Martin et al. (2018) Radiomic MRI signature reveals three distinct subtypes of glioblastoma with different clinical and molecular characteristics, offering prognostic value beyond IDH1. Sci Rep 8:5087
Akbari, Hamed; Bakas, Spyridon; Pisapia, Jared M et al. (2018) In vivo evaluation of EGFRvIII mutation in primary glioblastoma patients via complex multiparametric MRI signature. Neuro Oncol 20:1068-1079
Rathore, Saima; Bakas, Spyridon; Pati, Sarthak et al. (2018) Brain Cancer Imaging Phenomics Toolkit (brain-CaPTk): An Interactive Platform for Quantitative Analysis of Glioblastoma. Brainlesion (2017) 10670:133-145
Fathi Kazerooni, Anahita; Nabil, Mahnaz; Zeinali Zadeh, Mehdi et al. (2018) Characterization of active and infiltrative tumorous subregions from normal tissue in brain gliomas using multiparametric MRI. J Magn Reson Imaging 48:938-950
Davatzikos, Christos; Rathore, Saima; Bakas, Spyridon et al. (2018) Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome. J Med Imaging (Bellingham) 5:011018
Bakas, Spyridon; Akbari, Hamed; Pisapia, Jared et al. (2017) In Vivo Detection of EGFRvIII in Glioblastoma via Perfusion Magnetic Resonance Imaging Signature Consistent with Deep Peritumoral Infiltration: The ?-Index. Clin Cancer Res 23:4724-4734
Mang, Andreas; Ruthotto, Lars (2017) A LAGRANGIAN GAUSS-NEWTON-KRYLOV SOLVER FOR MASS- AND INTENSITY-PRESERVING DIFFEOMORPHIC IMAGE REGISTRATION. SIAM J Sci Comput 39:B860-B885
Mang, Andreas; Biros, George (2017) A SEMI-LAGRANGIAN TWO-LEVEL PRECONDITIONED NEWTON-KRYLOV SOLVER FOR CONSTRAINED DIFFEOMORPHIC IMAGE REGISTRATION. SIAM J Sci Comput 39:B1064-B1101
Sotiras, Aristeidis; Toledo, Jon B; Gur, Raquel E et al. (2017) Patterns of coordinated cortical remodeling during adolescence and their associations with functional specialization and evolutionary expansion. Proc Natl Acad Sci U S A 114:3527-3532
Mang, Andreas; Biros, George (2016) Constrained H1-regularization schemes for diffeomorphic image registration. SIAM J Imaging Sci 9:1154-1194

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