Nitrogenase, the enzyme responsible for biological nitrogen fixation, consists of two metalloproteins, the Fe- protein and MoFe-protein, that mediate the coupling of ATP hydrolysis to the reduction of dinitrogen to ammonia. Nitrogenase is a prototypic example of an enzyme with multiple and varied iron-sulfur clusters that participate in electron transfer and substrate reduction, as well as providing an excellent model for energy transduction of ATP hydrolysis. We are pursuing coordinated biochemical and crystallographic approaches to determine the three-dimensional structures of defined states of the nitrogenase proteins individually and in complexes. Our research objectives emphasize biochemical, biophysical and structural characterization of nitrogenase proteins trapped under turnover conditions;an assessment of the oxidation states of metal sites in different forms of the nitrogenase proteins through crystallographic refinement at multiple wavelengths; and preparation and analysis of the nitrogenase proteins complexed with nucleotides and physiological electron donors. The structural and biochemical studies will be extended to other energy transduction systems, specifically the family of integral membrane protein ATP Binding Cassette (ABC) transporters, to assess the generality of our conclusions concerning the mechanisms of nucleotide dependent transduction processes. A high priority is to complete our current structural studies of ABC transporters mediating the import into cells of metal-chelate species and amino acids, followed by structural and biochemical characterization of defined complexes of these transporters with nucleotides and binding proteins. These studies will be extended to additional transporters implicated in metal metabolism. Electron transfer and ATP dependent transduction processes form the heart of cellular energy metabolism. Nitrogenase not only couples these elements to generate an essential nutrient, but also serves as an excellent structural model for proteins participating in signal and energy transduction pathways, including G- proteins and the ras oncogene. The study of ABC transporters will extend our structural and mechanistic focus on ATP dependent processes to a widespread family of integral membrane proteins, including biomedically relevant members responsible for multidrug resistance and cystic fibrosis.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Method to Extend Research in Time (MERIT) Award (R37)
Project #
5R37GM045162-22
Application #
8232083
Study Section
Special Emphasis Panel (NSS)
Program Officer
Smith, Ward
Project Start
1991-01-01
Project End
2014-03-31
Budget Start
2012-04-01
Budget End
2014-03-31
Support Year
22
Fiscal Year
2012
Total Cost
$314,612
Indirect Cost
$118,592
Name
California Institute of Technology
Department
Type
Schools of Engineering
DUNS #
009584210
City
Pasadena
State
CA
Country
United States
Zip Code
91125
Spatzal, Thomas; Schlesier, Julia; Burger, Eva-Maria et al. (2016) Nitrogenase FeMoco investigated by spatially resolved anomalous dispersion refinement. Nat Commun 7:10902
Spatzal, Thomas; Perez, Kathryn A; Howard, James B et al. (2015) Catalysis-dependent selenium incorporation and migration in the nitrogenase active site iron-molybdenum cofactor. Elife 4:e11620
Mattle, Daniel; Zhang, Limei; Sitsel, Oleg et al. (2015) A sulfur-based transport pathway in Cu+-ATPases. EMBO Rep 16:728-40
Zhang, Li Mei; Morrison, Christine N; Kaiser, Jens T et al. (2015) Nitrogenase MoFe protein from Clostridium pasteurianum at 1.08?Å resolution: comparison with the Azotobacter vinelandii MoFe protein. Acta Crystallogr D Biol Crystallogr 71:274-82
Nguyen, Phong T; Li, Qi Wen; Kadaba, Neena S et al. (2015) The contribution of methionine to the stability of the Escherichia coli MetNIQ ABC transporter-substrate binding protein complex. Biol Chem 396:1127-34
Morrison, Christine N; Hoy, Julie A; Zhang, Limei et al. (2015) Substrate pathways in the nitrogenase MoFe protein by experimental identification of small molecule binding sites. Biochemistry 54:2052-60
Tezcan, F Akif; Kaiser, Jens T; Howard, James B et al. (2015) Structural evidence for asymmetrical nucleotide interactions in nitrogenase. J Am Chem Soc 137:146-9
Spatzal, Thomas; Perez, Kathryn A; Einsle, Oliver et al. (2014) Ligand binding to the FeMo-cofactor: structures of CO-bound and reactivated nitrogenase. Science 345:1620-3
Yang, Kun-Yun; Haynes, Chad A; Spatzal, Thomas et al. (2014) Turnover-dependent inactivation of the nitrogenase MoFe-protein at high pH. Biochemistry 53:333-43
Meloni, Gabriele; Zhang, Limei; Rees, Douglas C (2014) Transmembrane type-2-like Cu2+ site in the P1B-3-type ATPase CopB: implications for metal selectivity. ACS Chem Biol 9:116-21

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