The Center for Clinical Epidemiology and Biostatistics (CCEB), the Infectious Diseases Division within the Department of Medicine, and the Division of Infectious Diseases within the Department of Pediatrics, all of the University of Pennsylvania (Penn) School of Medicine, resubmit this request for the renewal of an innovative and successful research training program for post-doctoral training for clinicians in infectious diseases clinical research. Penn and the School of Medicine promote an academic environment in which basic and clinical research are encouraged and viewed as attractive career paths for trainees. This training program attracts infectious disease trainees from other institutions nationwide and the graduates of this training program are placed in other institutions nationwide, resulting in a program of the highest impact. The two- to three-year training program consists of required courses in clinical epidemiology, research methodology, biostatistics, and infectious diseases epidemiology;elective courses;journal clubs and clinical research conferences focusing on research issues in infectious diseases;extensive independent readings;attendance at and participation in research seminars at the CCEB and the adult and pediatric infectious diseases divisions;and the completion of an independent research project. The program is designed to: 1) train clinicians to be rigorous and independent academic investigators able to use the range of approaches available in epidemiology to address research issues regarding the etiology, prognosis, prevention and early detection, treatment, clinical economics, technology assessment, medical decision making, and quality of patient care in infectious diseases;2) provide closely mentored research experiences with faculty preceptors in clinical epidemiology and infectious diseases;and 3) strengthen the links between traditional epidemiology and infectious diseases. Trainees matriculate in the Master of Science in Clinical Epidemiology (MSCE) degree program. Strengths of the proposed program are: 1) the long history of successful research training programs in the CCEB and the adult and pediatric infectious diseases divisions;2) the collaborative links that have been forged among these academic entities;3) the comprehensive course offerings and research programs that are available to trainees;and 4) an extensive set of experienced program directors and faculty preceptors with successful training records. In addition, the availability of the broad range of rich expertise of the faculties in the CCEB and the adult and pediatric infectious diseases divisions;numerous existing large databases that can be used for research projects and training;a broad array of specialized analytic capabilities available for clinical studies (e.g., clinical trials, case-control, cohort research, etc.);and the faculties'commitment to collaborative research and training, combine to provide an ideal environment for this training program.

Public Health Relevance

There is a major national shortage of qualified clinicians able to conduct rigorous clinical research in infectious diseases. Critical issues that can be addressed by these individuals include the spread, treatment, and prevention of HIV;pandemic preparedness and biodefense, the overuse and misuse of antimicrobial therapy that lead to the emergence of antibiotic-resistant pathogens;and the emergence of new infectious diseases. Additional benefits include the identification of novel therapeutic regimens for infectious diseases;greater insight into individual- and community-level risk factors for disease transmission;and the relationship between infectious diseases, treatment and chronic illnesses such as heart disease.

National Institute of Health (NIH)
National Institute of Allergy and Infectious Diseases (NIAID)
Institutional National Research Service Award (T32)
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Microbiology and Infectious Diseases B Subcommittee (MID)
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Mcsweegan, Edward
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University of Pennsylvania
Biostatistics & Other Math Sci
Schools of Medicine
United States
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Burns, Julianne E; Graf, Erin H (2018) Closing the Brief Case: Disseminated Neisseria gonorrhoeae in an 18-Year-Old Female. J Clin Microbiol 56:
Burns, Julianne E; Graf, Erin H (2018) The Brief Case: Disseminated Neisseria gonorrhoeae in an 18-Year-Old Female. J Clin Microbiol 56:
Redwood, Robert; Knobloch, Mary Jo; Pellegrini, Daniela C et al. (2018) Reducing unnecessary culturing: a systems approach to evaluating urine culture ordering and collection practices among nurses in two acute care settings. Antimicrob Resist Infect Control 7:4
Ziegler, Matthew; Landsburg, Daniel; Pegues, David et al. (2018) Clinical Characteristics and Outcomes of Hematologic Malignancy Patients With Positive Clostridium difficile Toxin Immunoassay Versus Polymerase Chain Reaction Test Results. Infect Control Hosp Epidemiol 39:863-866
Chang, Christine; Feemster, Kristen A; Coffin, Susan et al. (2017) Treatment-Related Complications in Children Hospitalized With Disseminated Lyme Disease. J Pediatric Infect Dis Soc 6:e152-e154
Handy, Lori K; Maroudi, Stefania; Powell, Maura et al. (2017) The impact of access to immunization information on vaccine acceptance in three countries. PLoS One 12:e0180759
Shahbazian, J H; Hahn, P D; Ludwig, S et al. (2017) Multidrug and mupirocin resistance in environmental methicillin-resistant Staphylococcus aureus (MRSA) collected from the homes of people diagnosed with a community-onset (CO-) MRSA infection. Appl Environ Microbiol :
Handy, Lori K; Bryan, Matthew; Gerber, Jeffrey S et al. (2017) Variability in Antibiotic Prescribing for Community-Acquired Pneumonia. Pediatrics 139:
Anesi, Judith A; Lautenbach, Ebbing; Nachamkin, Irving et al. (2016) Clinical and Molecular Characterization of Community-Onset Urinary Tract Infections Due to Extended-Spectrum Cephalosporin-Resistant Enterobacteriaceae. Infect Control Hosp Epidemiol 37:1433-1439
Kelly, Brendan J; Imai, Ize; Bittinger, Kyle et al. (2016) Composition and dynamics of the respiratory tract microbiome in intubated patients. Microbiome 4:7

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