We have been using an autotransporter produced by E. coli O157:H7 called EspP as a model protein to study autotransporter biogenesis. In one major line of investigation we have been examining the mechanism by which the EspP passenger domain is translocated across the outer membrane (OM). It was originally proposed that the passenger domain is secreted through a channel formed by the covalently linked beta domain (whence the name autotransporter), but results that we obtained from both biochemical and structural studies are inconsistent with this hypothesis. We found that the insertion of a small linker into the EspP passenger domain effectively creates a translocation intermediate by transiently stalling translocation near the site of the insertion. By using a site-specific photocrosslinking approach we found that residues adjacent to the stall point interact with BamA, a component of a heterooligomeric complex (Bam complex) that catalyzes OM protein assembly, and that residues that are trapped in the periplasm (the space between the two cell membranes) interact with the chaperones SurA and Skp. The EspP-BamA interaction is short-lived and can only be detected when passenger domain translocation is stalled. These results support a model in which molecular chaperones prevent misfolding of the passenger domain prior to its secretion and the Bam complex plays a major role in facilitating both the integration of the beta domain into the OM and the translocation of the passenger domain across the OM. We also found that periplasmic chaperones and specific components of the Bam complex interact with the EspP beta domain in a temporally and spatially regulated fashion. While the chaperone Skp initially interacts with the entire beta domain, BamA, BamB and BamD subsequently interact with discrete beta domain regions. BamB and BamD remain bound to the beta domain longer than BamA and therefore appear to function at a later stage of assembly. Our results suggest that the hitherto enigmatic BamB and BamD proteins play a direct role in the membrane integration of autotransporter beta domains and possibly other beta barrel proteins. In a second series of studies we have been examining the energetics of passenger domain secretion. Because the periplasm lacks ATP, the source of energy that drives passenger domain secretion is unknown. The prevailing model postulates that vectorial folding of the passenger domain in the extracellular space facilitates unidirectional secretion. We used a chimeric protein composed of the receptor-binding domain (RD) of the Bordetella pertussis adenylate cyclase toxin CyaA fused to the C-terminus of EspP to test this hypothesis. The RD is a highly acidic, repetitive polypeptide that is intrinsically disordered in the absence of calcium. Surprisingly, we found that the RD moiety is efficiently secreted when it remained in an unfolded conformation. Furthermore, we found that neutralizing or reversing the charge of acidic amino acid clusters stalls translocation in the vicinity of the altered residues. These results challenge the vectorial folding model and, taken together with an analysis of naturally occurring passenger domain sequences, provide evidence that a net negative charge plays a significant role in driving the translocation reaction. Recently, we were able to reconstitute the assembly of EspP in vitro using purified components. We found that the Bam complex and SurA are both necessary and sufficient to promote the integration of the EspP beta domain into proteoliposomes and the translocation of the passenger domain into the lumen of the vesicles. The reaction does not require ATP or other exogenous energy source. Because passenger domain translocation proceeds in a C-to-N-terminal direction, we were able to examine the assembly of N-terminally truncated EspP derivatives that have different length passenger domains. Interestingly, we found that the rate of assembly is independent of passenger domain length. This observation suggests that the membrane integration of the beta domain is the rate-limiting step in autotransporter assembly. We also found that a single copy of the Bam complex incorporated into nanodiscs is sufficient to catalyze EspP assembly.

Project Start
Project End
Budget Start
Budget End
Support Year
10
Fiscal Year
2016
Total Cost
Indirect Cost
Name
U.S. National Inst Diabetes/Digst/Kidney
Department
Type
DUNS #
City
State
Country
Zip Code
Hussain, Sunyia; Bernstein, Harris D (2018) The Bam complex catalyzes efficient insertion of bacterial outer membrane proteins into membrane vesicles of variable lipid composition. J Biol Chem 293:2959-2973
Peterson, Janine H; Hussain, Sunyia; Bernstein, Harris D (2018) Identification of a novel post-insertion step in the assembly of a bacterial outer membrane protein. Mol Microbiol 110:143-159
Sikdar, Rakesh; Peterson, Janine H; Anderson, D Eric et al. (2017) Folding of a bacterial integral outer membrane protein is initiated in the periplasm. Nat Commun 8:1309
Peterson, Janine H; Plummer, Ashlee M; Fleming, Karen G et al. (2017) Selective pressure for rapid membrane integration constrains the sequence of bacterial outer membrane proteins. Mol Microbiol 106:777-792
In, Julie; Foulke-Abel, Jennifer; Zachos, Nicholas C et al. (2016) Enterohemorrhagic Escherichia coli reduce mucus and intermicrovillar bridges in human stem cell-derived colonoids. Cell Mol Gastroenterol Hepatol 2:48-62.e3
Bernstein, Harris D (2015) Looks can be deceiving: recent insights into the mechanism of protein secretion by the autotransporter pathway. Mol Microbiol 97:205-15
Drobnak, Igor; Braselmann, Esther; Chaney, Julie L et al. (2015) Of linkers and autochaperones: an unambiguous nomenclature to identify common and uncommon themes for autotransporter secretion. Mol Microbiol 95:1-16
Roman-Hernandez, Giselle; Bernstein, Harris D (2015) An In Vitro Assay for Outer Membrane Protein Assembly by the BAM Complex. Methods Mol Biol 1329:203-13
Roman-Hernandez, Giselle; Peterson, Janine H; Bernstein, Harris D (2014) Reconstitution of bacterial autotransporter assembly using purified components. Elife 3:e04234
Pavlova, Olga; Peterson, Janine H; Ieva, Raffaele et al. (2013) Mechanistic link between * barrel assembly and the initiation of autotransporter secretion. Proc Natl Acad Sci U S A 110:E938-47

Showing the most recent 10 out of 20 publications