This year we published six primary studies related to DNA replication fidelity. One study showed that dNTP pool imbalances promote replication infidelity in yeast approximately equally well during leading and lagging strand DNA replication. Another study showed that the recently discovered enzyme Prim-Pol conducts translesion DNA synthesis. We showed that deposition of histone H2A.Z by the SWR-C remodeling enzyme prevents genome instability. We performed a structure-function study of DNA polymerase mu showing that it has the unique ability to conduct DNA synthesis using only the 5-prime template nucleotide in a short gap. Lastly, we conducted two studies of ribonucleotide incorporation during DNA replication in yeast. One study inferred the roles of the three major eukaryotic replicases in leading and lagging strand replication. The other study indicated that deletions of short repetitive DNA sequences result from topoisomerase 1 cleavage of the DNA backbone at ribonucleotides incorporated by DNA polymerase epsilon during leading strand replication, but not by cleavage at ribonucleotides incorporated during lagging strand replication by Pol delta or Pol alpha.

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25
Fiscal Year
2015
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Indirect Cost
Name
U.S. National Inst of Environ Hlth Scis
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Williams, Jessica S; Kunkel, Thomas A (2018) Studying Topoisomerase 1-Mediated Damage at Genomic Ribonucleotides. Methods Mol Biol 1703:241-257
Kaminski, Andrea M; Tumbale, Percy P; Schellenberg, Matthew J et al. (2018) Structures of DNA-bound human ligase IV catalytic core reveal insights into substrate binding and catalysis. Nat Commun 9:2642
Zhou, Zhi-Xiong; Williams, Jessica S; Kunkel, Thomas A (2018) Studying Ribonucleotide Incorporation: Strand-specific Detection of Ribonucleotides in the Yeast Genome and Measuring Ribonucleotide-induced Mutagenesis. J Vis Exp :
Kunkel, Thomas A (2018) A simple but profound mutation in mouse DNA polymerase ? drives tumorigenesis. J Clin Invest :
Huang, Shar-Yin N; Williams, Jessica S; Arana, Mercedes E et al. (2017) Topoisomerase I-mediated cleavage at unrepaired ribonucleotides generates DNA double-strand breaks. EMBO J 36:361-373
Kunkel, Thomas A; Burgers, Peter M J (2017) Arranging eukaryotic nuclear DNA polymerases for replication: Specific interactions with accessory proteins arrange Pols ?, ?, and ? in the replisome for leading-strand and lagging-strand DNA replication. Bioessays 39:
Williams, Jessica S; Gehle, Daniel B; Kunkel, Thomas A (2017) The role of RNase H2 in processing ribonucleotides incorporated during DNA replication. DNA Repair (Amst) 53:52-58
Jamsen, Joonas A; Beard, William A; Pedersen, Lars C et al. (2017) Time-lapse crystallography snapshots of a double-strand break repair polymerase in action. Nat Commun 8:253
Burgers, Peter M J; Kunkel, Thomas A (2017) Eukaryotic DNA Replication Fork. Annu Rev Biochem 86:417-438
Burgers, Peter M J; Gordenin, Dmitry; Kunkel, Thomas A (2016) Who Is Leading the Replication Fork, Pol ? or Pol ?? Mol Cell 61:492-493

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