of Work: The goal of this project is to understand how DNA polymerase selectivity and exonucleolytic proofreading contribute to DNA replication fidelity in human cells. We previously determined the fidelity of undamaged DNA replication by the multiprotein replication apparatus in extracts of normal human cells and tumor cells. Although the overall fidelity of replication is similar on the leading and lagging strands, base substitution and frameshift error rates do differ at some sites for leading and lagging strand replication aproteins. In order to better understand the effects of known mutagens and carcinogens on the fidelity of DNA synthesis, we have performed studies with DNA molecules containing several different types of DNA adducts. This year, the probability of termination versus bypass and the extent of mutatgenic bypass has been determined for psoralen monoadducts. In an attempt to understand the instabilty of microsatellite sequences in certain tumors and the instability in triplet repeat sequences in several hereditary human diseases, we extended earlier studies of the fideilty of replication of homopolymeric sequences to the copying of dinucleotide and triplet repeat sequences. Both polymerase selectivity and exonucleolytic proofreading are diminished during replication of these repetitive sequences. This may place an increased relative burden on post- replication repair processes to reduce rates of addition and deletion mutations in organisms whose genomes contain abundant simple repeat DNA sequences. We have also presented a novel model that can explain certain features of triplet repeat expansion, based on aberrant processing of Okazaki fragments during DNA replication. These studies are important for understanding the molecular genetic basis for the initiating events in diseases and the risk posed to individuals in the population by exposure to DNA damaging agents.

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES065046-11
Application #
6162271
Study Section
Special Emphasis Panel (LMG)
Project Start
Project End
Budget Start
Budget End
Support Year
11
Fiscal Year
1997
Total Cost
Indirect Cost
City
State
Country
United States
Zip Code
Kunkel, Thomas A (2004) DNA replication fidelity. J Biol Chem 279:16895-8
McCulloch, Scott D; Kokoska, Robert J; Chilkova, Olga et al. (2004) Enzymatic switching for efficient and accurate translesion DNA replication. Nucleic Acids Res 32:4665-75
Kozmin, Stanislav G; Pavlov, Youri I; Kunkel, Thomas A et al. (2003) Roles of Saccharomyces cerevisiae DNA polymerases Poleta and Polzeta in response to irradiation by simulated sunlight. Nucleic Acids Res 31:4541-52
Matsuda, Toshiro; Vande Berg, Brian J; Bebenek, Katarzyna et al. (2003) The base substitution fidelity of DNA polymerase beta-dependent single nucleotide base excision repair. J Biol Chem 278:25947-51
Pavlov, Youri I; Newlon, Carol S; Kunkel, Thomas A (2002) Yeast origins establish a strand bias for replicational mutagenesis. Mol Cell 10:207-13
Rogozin, Igor B; Kunkel, Thomas A; Pavlov, Youri I (2002) Double-strand breaks in DNA during somatic hypermutation of Ig genes: cause or consequence? Trends Immunol 23:12-3
Pavlov, Youri I; Rogozin, Igor B; Galkin, Alexey P et al. (2002) Correlation of somatic hypermutation specificity and A-T base pair substitution errors by DNA polymerase eta during copying of a mouse immunoglobulin kappa light chain transgene. Proc Natl Acad Sci U S A 99:9954-9
Pavlov, Y I; Nguyen, D; Kunkel, T A (2001) Mutator effects of overproducing DNA polymerase eta (Rad30) and its catalytically inactive variant in yeast. Mutat Res 478:129-39
Pavlov, Y I; Shcherbakova, P V; Kunkel, T A (2001) In vivo consequences of putative active site mutations in yeast DNA polymerases alpha, epsilon, delta, and zeta. Genetics 159:47-64
Jin, Y H; Obert, R; Burgers, P M et al. (2001) The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability. Proc Natl Acad Sci U S A 98:5122-7

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