Radical species are an unavoidable consequence of respiration and the environment, and are tightly buffered by small molecule antioxidants and redo detoxifying enzymes. Oxidative stress emerges when an imbalance develops between the levels of reactive oxygen species and the cell's ability to readily eliminate the reactive intermediates or to repair the resulting damage. Aberrant oxidative signaling is perhaps one of the most important factors contributing to aging, neurodegeneration, heart disease, diabetes, and cancer. In order to induce a phenotypic change, oxidative stress must induce biochemical alterations to the genome, proteome and/or metabolome. Crystallographic analysis revealed that DJ-1 harbors a stabile sulfinic acid, and this oxidative modification is required for the suppression of mitochondrial oxidative stress. We have now shown that this sulfinic acid can react with nitrosothiols to form a thiosulfonate linkage, which can then be reduced by cellular thiols. Amazingly, sulfinates react with nitrosothiols faster than thiolates in standard physiological buffers. This provides a potential mechanism for DJ-1 function, which will be further explored with this award. We extended this approach to develop biotin-linked sulfinates for the direct detection and enrichment of endogenous nitrosylated proteins. In preliminary experiments, this method led to the identification of >1500 endogenous nitrosylated proteins, and establishes a robust new platform to functionally interrogate the dynamics of S-nitrosylation. In addition, we describe a new methodology for the selective enrichment of sulfinic acids based on orthogonal alkylation reagents, and propose to identify novel functional sulfinates in the proteome. Finally, we present a new class of ratiometric fluorescent probes for live-cell imaging and 19F-NMR of protein sulfenylation in vivo. Despite the central role of oxidative stress in human health, our ability to study the precise mechanisms of such modifications is hampered by a lack of selective chemical and analytical methods. In this proposal, we present a series of innovative chemical approaches to study oxidative damage across experimental scales, from live-cell imaging to in vivo imaging, in addition to proteome-wide annotation of oxidative post-translational modifications. Furthermore, we present a likely mechanism for the Parkinson's disease-linked redox chaperone DJ-1, and present new mechanism-based probes to functionally annotate and profile S-nitrosylation (R-SNO), S-sulfenylation (R-SOH), and S-sulfinylation (R-SO2H).
This proposal introduces new methods for the analysis of oxidative cysteine post-translational modifications on proteins. This research aims to understand how these modifications are linked to neurodegenerative disease. The aims of this proposal describe the development and validation of new tools to study protein oxidation by fluorescence, magnetic resonance imaging, and mass spectrometry.
| Borotto, Nicholas B; Ileka, Kevin M; Tom, Christina A T M B et al. (2018) Free Radical Initiated Peptide Sequencing for Direct Site Localization of Sulfation and Phosphorylation with Negative Ion Mode Mass Spectrometry. Anal Chem 90:9682-9686 |
| Haynes, Sarah E; Majmudar, Jaimeen D; Martin, Brent R (2018) DIA-SIFT: A Precursor and Product Ion Filter for Accurate Stable Isotope Data-Independent Acquisition Proteomics. Anal Chem 90:8722-8726 |
| Won, Sang Joon; Martin, Brent R (2018) Temporal Profiling Establishes a Dynamic S-Palmitoylation Cycle. ACS Chem Biol 13:1560-1568 |
| Won, Sang Joon; Cheung See Kit, Melanie; Martin, Brent R (2018) Protein depalmitoylases. Crit Rev Biochem Mol Biol 53:83-98 |
| Borotto, Nicholas B; McClory, Phillip J; Martin, Brent R et al. (2017) Targeted Annotation of S-Sulfonylated Peptides by Selective Infrared Multiphoton Dissociation Mass Spectrometry. Anal Chem 89:8304-8310 |
| ElAzzouny, Mahmoud; Tom, Christopher T M B; Evans, Charles R et al. (2017) Dimethyl Itaconate Is Not Metabolized into Itaconate Intracellularly. J Biol Chem 292:4766-4769 |
| Hernandez, Jeannie L; Davda, Dahvid; Cheung See Kit, Melanie et al. (2017) APT2 Inhibition Restores Scribble Localization and S-Palmitoylation in Snail-Transformed Cells. Cell Chem Biol 24:87-97 |
| Lopez, Jeffrey E; Haynes, Sarah E; Majmudar, Jaimeen D et al. (2017) HDAC8 Substrates Identified by Genetically Encoded Active Site Photocrosslinking. J Am Chem Soc 139:16222-16227 |
| Kuo, Yu-Hsuan; Konopko, Aaron M; Borotto, Nicholas B et al. (2017) Profiling Protein S-Sulfination with Maleimide-Linked Probes. Chembiochem 18:2028-2032 |
| Haynes, Sarah E; Polasky, Daniel A; Dixit, Sugyan M et al. (2017) Variable-Velocity Traveling-Wave Ion Mobility Separation Enhancing Peak Capacity for Data-Independent Acquisition Proteomics. Anal Chem 89:5669-5672 |
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