This proposal includes a set of six research projects which form a coherent and integrated effort to understand the processes tending to alter genome structure and organization, and the mechanisms cells possess to promote, resist and repair such modifications. Because these processes are undoubtedly fundamental to cell and organismal survival, we presume that they may be important in cellular and organismal senescence. Accordingly, a principal aim of this program project is to characterize the participants and molecular mechanisms of selected DNA transactions, and to explore their status and possible relevance to the aging process. The individual projects focus on: 1. repair of double strand breaks and deletions by recombination in mammalian cells, 2. regulation of chromosomal replication and its influence on the frequency of chromosome breakage, recombinational loss and nondisjunction, 3. an assessment of the role of DNA damage and repair in aging phenomena by studies of the developmental or age-related factors which account for the variation in the repairability of DNA damage in different regions of the genome of terminally differentiated cells, 4. an analysis of the replication and error-correction processes in highly purified replication systems with a view toward establishing assays and criteria for evaluating replication fidelity during aging processes, 5. factors governing genome integrity: the replication fidelity of normal and damaged DNA by Herpes Simplex DNA polymerase, and the mechanism of site-specific intramolecular recombination between homologous sequences catalyzed by a recently detected mammalian enzyme, 6. the mechanism of genome rearrangements leading to the assembly of functional immunoglobin heavy and light chains, particularly the switch recombinations that link a heavy chain variable region to any one of five constant regions.

Agency
National Institute of Health (NIH)
Institute
National Institute on Aging (NIA)
Type
Research Program Projects (P01)
Project #
5P01AG002908-13
Application #
3090636
Study Section
Biological and Clinical Aging Review Committee (BCA)
Project Start
1991-08-01
Project End
1996-07-31
Budget Start
1993-08-01
Budget End
1994-07-31
Support Year
13
Fiscal Year
1993
Total Cost
Indirect Cost
Name
Stanford University
Department
Type
Schools of Medicine
DUNS #
800771545
City
Stanford
State
CA
Country
United States
Zip Code
94305
Satoh, M S; Hanawalt, P C (1997) Competent transcription initiation by RNA polymerase II in cell-free extracts from xeroderma pigmentosum groups B and D in an optimized RNA transcription assay. Biochim Biophys Acta 1354:241-51
Koehler, D R; Courcelle, J; Hanawalt, P C (1996) Kinetics of pyrimidine(6-4)pyrimidone photoproduct repair in Escherichia coli. J Bacteriol 178:1347-50
Satoh, M S; Hanawalt, P C (1996) TFIIH-mediated nucleotide excision repair and initiation of mRNA transcription in an optimized cell-free DNA repair and RNA transcription assay. Nucleic Acids Res 24:3576-82
Elias-Arnanz, M; Firmenich, A A; Berg, P (1996) Saccharomyces cerevisiae mutants defective in plasmid-chromosome recombination. Mol Gen Genet 252:530-8
Dutch, R E; Bianchi, V; Lehman, I R (1995) Herpes simplex virus type 1 DNA replication is specifically required for high-frequency homologous recombination between repeated sequences. J Virol 69:3084-9
Lommel, L; Carswell-Crumpton, C; Hanawalt, P C (1995) Preferential repair of the transcribed DNA strand in the dihydrofolate reductase gene throughout the cell cycle in UV-irradiated human cells. Mutat Res 336:181-92
Hanawalt, P C (1995) DNA repair comes of age. Mutat Res 336:101-13
Hays, S L; Firmenich, A A; Berg, P (1995) Complex formation in yeast double-strand break repair: participation of Rad51, Rad52, Rad55, and Rad57 proteins. Proc Natl Acad Sci U S A 92:6925-9
Firmenich, A A; Elias-Arnanz, M; Berg, P (1995) A novel allele of Saccharomyces cerevisiae RFA1 that is deficient in recombination and repair and suppressible by RAD52. Mol Cell Biol 15:1620-31
Ford, J M; Lommel, L; Hanawalt, P C (1994) Preferential repair of ultraviolet light-induced DNA damage in the transcribed strand of the human p53 gene. Mol Carcinog 10:105-9

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