Pathogenic bacteria are often capable of killing cells within the hosts they infect. The molecular mechanisms underlying the cytotoxic actions of bacteria on human cells are only partly understood, but generally they involve secretion of killer proteins from bacteria, and often these proteins are injected into host cells by Type III or IV secretion mechanisms. Examples of apoptosis-inducing virulence factors have been found in Yersinia (YopJ), Shigella (ipa), Salmonella (sip), and Anthrax (Lethal Factor) species. The mechanisms by which these bacterial gene products induce apoptosis of human cells are diverse. Knowledge of apoptosis-inducing virulence factors and information about their mechanisms of action can provide the basis for strategies designed to treat or prevent bacterial disease. Using bioinformatics approaches, we have identified several candidate apoptosis-inducing virulence factors encoded in the genomes of pathogenic bacteria. We propose to characterize the apoptosis-inducing activity of these bacterial proteins and to determine their mechanisms of action in human cells. It is hypothesized that some of these bacterial proteins will prove to be virulence factors, which are important for causation of disease. A combination of cellular, molecular, and biochemical methods will be applied to characterize the mechanisms of these candidate virulence factors, with the validated factors then progressing into more in-depth structural analysis through collaborations with other scientists participating in the project. Where warranted, bacterial apoptosis-inducing proteins will become targets for chemical compound library screening, and the resulting chemical entities will be used for further studies of the pathobiology of the target proteins. Altogether, the information derived from these studies may reveal strategies for preventing or ameliorating cell death induced by pathogenic bacteria, thus complementing traditional antibiotics in the prevention and treatment of bacterial diseases and agents of biological warfare.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Program Projects (P01)
Project #
5P01AI055789-05
Application #
7647320
Study Section
Special Emphasis Panel (ZAI1)
Project Start
Project End
Budget Start
2008-07-01
Budget End
2009-03-31
Support Year
5
Fiscal Year
2008
Total Cost
$303,441
Indirect Cost
Name
Sanford-Burnham Medical Research Institute
Department
Type
DUNS #
020520466
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Aleshin, Alexander E; DiScipio, Richard G; Stec, Boguslaw et al. (2012) Crystal structure of C5b-6 suggests structural basis for priming assembly of the membrane attack complex. J Biol Chem 287:19642-52
Low, Lieh Yoon; Yang, Chen; Perego, Marta et al. (2011) Role of net charge on catalytic domain and influence of cell wall binding domain on bactericidal activity, specificity, and host range of phage lysins. J Biol Chem 286:34391-403
Shiryaev, Sergey A; Chernov, Andrei V; Shiryaeva, Tatiana N et al. (2011) The acidic sequence of the NS4A cofactor regulates ATP hydrolysis by the HCV NS3 helicase. Arch Virol 156:313-8
Stranzl, Gudrun R; Santelli, Eugenio; Bankston, Laurie A et al. (2011) Structural insights into inhibition of Bacillus anthracis sporulation by a novel class of non-heme globin sensor domains. J Biol Chem 286:8448-58
Zhai, Dayong; Yu, Eric; Jin, Chaofang et al. (2010) Vaccinia virus protein F1L is a caspase-9 inhibitor. J Biol Chem 285:5569-80
Zhao, Li-Chun; Yang, Bo; Wang, Rengang et al. (2010) Type C botulinum toxin causes degeneration of motoneurons in vivo. Neuroreport 21:14-18
Shiryaev, Sergey A; Radichev, Ilian A; Ratnikov, Boris I et al. (2010) Isolation and characterization of selective and potent human Fab inhibitors directed to the active-site region of the two-component NS2B-NS3 proteinase of West Nile virus. Biochem J 427:369-76
Remacle, Albert G; Gawlik, Katarzyna; Golubkov, Vladislav S et al. (2010) Selective and potent furin inhibitors protect cells from anthrax without significant toxicity. Int J Biochem Cell Biol 42:987-95
Chan, Siew Leong; Mukasa, Takashi; Santelli, Eugenio et al. (2010) The crystal structure of a TIR domain from Arabidopsis thaliana reveals a conserved helical region unique to plants. Protein Sci 19:155-61
Shiryaev, Sergey A; Strongin, Alex Y (2010) Structural and functional parameters of the flaviviral protease: a promising antiviral drug target. Future Virol 5:593-606

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