The main goal of this program is to conduct a novel analysis of lymphocyte populations in diverse human lymphoid and mucosal tissues in steady state and in organ transplantation, to elucidate mechanisms by which human immune responses are distributed, function and are maintained in the whole body. The proposed studies can uniquely be accomplished by this program through our novel human tissue resource that is the focus of this core. We will use two sources of human samples for the proposed studies in all projects (Projects 1, 2, 3): deceased organ donors and peripheral blood and biopsies from intestinal transplant patients obtained in conjunction with the Columbia Center for Translational Immunology (CCTI) Human studies core. For Service aim 1, we will obtain and process multiple lymphoid and mucosal tissues from human organ donors. We have established the necessary protocols and collaborations with Columbia University Medical Center (CUMC) surgeons and LiveOnNY to obtain from research-consented organ donors, tissues that are not used for life-saving transplantation. We already have the infrastructure set up to obtain multiple primary and secondary lymphoid tissues (bone marrow, thymus, spleen, peripheral, lung- and intestinal draining lymph nodes and tonsils), and mucosal tissues (lungs, small and large intestinal sections) from organ donors whose next-of-kin have consented for the use of tissues for research. The tissues will be processed in the laboratory for obtaining cell suspensions and for preserving tissue sections and cells and/or whole tissues will be distributed to all projects for analysis. For service aim 2, we will coordinate the acquisition of biopsy and peripheral blood samples from transplant patients. In this part of the core, we will obtain biopsy and peripheral blood specimens from intestinal transplant patients who will be enrolled in studies related to Project 3; we will maintain IRB protocols for obtaining samples, enroll patients in this study, and work with the clinicians to obtain biopsy and blood samples, and coordinate storage on unused samples in the CCTI biobank repository. For service aim 3, we will prepare and store tissue sections for imaging by all project laboratories and for a satellite project with Dr. Ron Germain, an intramural investigator at NIAID who will implement his high-dimensional imaging and histocytometry along with advanced computational algorithms to generate an imaging atlas of human immune cells in tissues throughout the body. Together, this core will provide an essential function to this program in the acquisition, processing and distribution of unique human samples to project investigators.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Program Projects (P01)
Project #
5P01AI106697-08
Application #
9931120
Study Section
Special Emphasis Panel (ZAI1)
Project Start
Project End
Budget Start
2020-06-01
Budget End
2021-05-31
Support Year
8
Fiscal Year
2020
Total Cost
Indirect Cost
Name
Columbia University (N.Y.)
Department
Type
DUNS #
621889815
City
New York
State
NY
Country
United States
Zip Code
10032
Rosenfeld, Aaron M; Meng, Wenzhao; Luning Prak, Eline T et al. (2018) ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing Data. Front Immunol 9:2107
Kumar, Brahma V; Connors, Thomas J; Farber, Donna L (2018) Human T Cell Development, Localization, and Function throughout Life. Immunity 48:202-213
Carpenter, D J; Granot, T; Matsuoka, N et al. (2018) Human immunology studies using organ donors: Impact of clinical variations on immune parameters in tissues and circulation. Am J Transplant 18:74-88
DeWolf, Susan; Grinshpun, Boris; Savage, Thomas et al. (2018) Quantifying size and diversity of the human T cell alloresponse. JCI Insight 3:
Senda, Takashi; Dogra, Pranay; Granot, Tomer et al. (2018) Microanatomical dissection of human intestinal T-cell immunity reveals site-specific changes in gut-associated lymphoid tissues over life. Mucosal Immunol :
Vander Heiden, Jason Anthony; Marquez, Susanna; Marthandan, Nishanth et al. (2018) AIRR Community Standardized Representations for Annotated Immune Repertoires. Front Immunol 9:2206
Chu, Coco; Moriyama, Saya; Li, Zhi et al. (2018) Anti-microbial Functions of Group 3 Innate Lymphoid Cells in Gut-Associated Lymphoid Tissues Are Regulated by G-Protein-Coupled Receptor 183. Cell Rep 23:3750-3758
Miron, Michelle; Kumar, Brahma V; Meng, Wenzhao et al. (2018) Human Lymph Nodes Maintain TCF-1hi Memory T Cells with High Functional Potential and Clonal Diversity throughout Life. J Immunol 201:2132-2140
Rosenfeld, Aaron M; Meng, Wenzhao; Chen, Dora Y et al. (2018) Computational Evaluation of B-Cell Clone Sizes in Bulk Populations. Front Immunol 9:1472
Fu, Jianing; Zuber, Julien; Martinez, Mercedes et al. (2018) Human Intestinal Allografts Contain Functional Hematopoietic Stem and Progenitor Cells that Are Maintained by a Circulating Pool. Cell Stem Cell :

Showing the most recent 10 out of 63 publications