The three projects in this PO1 will continue to share a core set of facilities which has two favorable results. First, this sharing is highly effective in cost and management time. Second, students and fellows interact during use of this common equipment promoting collaboration and cross fertilization. All Project Leaders and PI in this Program have offices and laboratories within 100 feet of one another. Some of the facilities supported in part by the PO1 core include a shared darkroom, centrifuges and microscopes. In these cases, maintenance contracts and supplies are supported. A Core facility for shRNA-vector libraries technician for use of short RNA hairpin vectors will be shared by all three projects. This technician will have laboratory space on the same floor as the three projects. All of the projects propose experiments where either large or small libraries of retro viral shRNA vectors will be used. These libraries are currently available from three sources, the Broad Institute RNA/Consortium, a library developed at Cold Spring Harbor by Dr. Greg Hannon, and a library developed by Dr. Ren6 Bernards of the Netherlands Cancer Institute. The RNAi Consortium based at MIT's Broad Institute is led by Professor William Hahn, a consultant to the Core. The Consortium has developed approximately 150,000 shRNA-lentivirus vectors which are targeted to silence approximately 30,000 genes orisoforms of genes. There will be other such libraries developed in the future. The Core will acquire, maintain and develop methods for optimalscreens with these RNAi libraries. The technician will also interact with the Virus Production Core Facility in the Center for Cancer Research. This will be both cost effective and insure a high quality of experimentation. Many of the above viral stocks are arrayed in microtiter dishes and to fully implement their use, a robotic system must be used to automate their distribution.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Program Projects (P01)
Project #
5P01CA042063-25
Application #
8133471
Study Section
Special Emphasis Panel (ZCA1)
Project Start
Project End
2012-05-31
Budget Start
2010-09-01
Budget End
2012-05-31
Support Year
25
Fiscal Year
2010
Total Cost
$219,427
Indirect Cost
Name
Massachusetts Institute of Technology
Department
Type
DUNS #
001425594
City
Cambridge
State
MA
Country
United States
Zip Code
02139
Gao, Ang; Shrinivas, Krishna; Lepeudry, Paul et al. (2018) Evolution of weak cooperative interactions for biological specificity. Proc Natl Acad Sci U S A 115:E11053-E11060
Dubbury, Sara J; Boutz, Paul L; Sharp, Phillip A (2018) CDK12 regulates DNA repair genes by suppressing intronic polyadenylation. Nature 564:141-145
Parisi, Tiziana; Balsamo, Michele; Gertler, Frank et al. (2018) The Rb tumor suppressor regulates epithelial cell migration and polarity. Mol Carcinog 57:1640-1650
Sabari, Benjamin R; Dall'Agnese, Alessandra; Boija, Ann et al. (2018) Coactivator condensation at super-enhancers links phase separation and gene control. Science 361:
Chiu, Anthony C; Suzuki, Hiroshi I; Wu, Xuebing et al. (2018) Transcriptional Pause Sites Delineate Stable Nucleosome-Associated Premature Polyadenylation Suppressed by U1 snRNP. Mol Cell 69:648-663.e7
Mori, Munemasa; Hazan, Renin; Danielian, Paul S et al. (2017) Cytoplasmic E2f4 forms organizing centres for initiation of centriole amplification during multiciliogenesis. Nat Commun 8:15857
Braun, Christian J; Stanciu, Monica; Boutz, Paul L et al. (2017) Coordinated Splicing of Regulatory Detained Introns within Oncogenic Transcripts Creates an Exploitable Vulnerability in Malignant Glioma. Cancer Cell 32:411-426.e11
Tammela, Tuomas; Sanchez-Rivera, Francisco J; Cetinbas, Naniye Malli et al. (2017) A Wnt-producing niche drives proliferative potential and progression in lung adenocarcinoma. Nature 545:355-359
Sasi, Nanda Kumar; Bhutkar, Arjun; Lanning, Nathan J et al. (2017) DDK Promotes Tumor Chemoresistance and Survival via Multiple Pathways. Neoplasia 19:439-450
JnBaptiste, Courtney K; Gurtan, Allan M; Thai, Kevin K et al. (2017) Corrigendum: Dicer loss and recovery induce an oncogenic switch driven by transcriptional activation of the oncofetal Imp1-3 family. Genes Dev 31:1066

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