The protein tubulin plays a vital role in the life of all eukaryotic cells. Microtubules, made most of tubulin, are involved in organelle movement, separation of chromosomes during cell division, and maintenance of cell shape, for example. The assembly and disassembly of microtubules at certain times are critical steps in the cell cycle. It is important to understand how tubulin molecules interact with each other as well as with a large number of other proteins, in order to have a full understanding of the life of the cell and it will be necessary to know the structure of tubulin before we can understand these interactions. We are studying tubulin structure by electron crystallography of two-dimensional, crystalline sheets that form in the presence of zinc ions. These sheets are in ideal form for study in the electron microscope, and circumvent the problem that attempts have so far been unsuccessful to obtain crystals of tubulin for x-ray crystallography. Electron crystallographic methods have been developed in recent years to the point where it is possible to derive a three-dimensional density map at a resolution sufficient to build an atomic model of the structure. We have now achieved our first goal of constructing the initial tubulin model, which gives great insight into tubulin's varied functions. We will extend the model to get a better picture of how the tubulin molecule fits into a microtubule. Combined with atomic structures of motor molecules or other microtubule-associated proteins, we should also be able to understand in detail, for example, how the proteins interact to produce directed motion and to enhance microtubule stability. Even at lower resolution we are able to gain substantial understanding of the relation between tubulin's structure and function and interactions with other molecules. In addition, a number of clinically useful drugs interact with tubulin, and the structure of tubulin-drug complexes will provides a basis for understanding these interactions and possible drug analogs that may modulate the interactions and provide more specific drug effects.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Program Projects (P01)
Project #
5P01GM051487-07
Application #
6325879
Study Section
Project Start
2000-07-01
Project End
2001-06-30
Budget Start
1998-10-01
Budget End
1999-09-30
Support Year
7
Fiscal Year
2000
Total Cost
$223,025
Indirect Cost
Name
Lawrence Berkeley National Laboratory
Department
Type
DUNS #
078576738
City
Berkeley
State
CA
Country
United States
Zip Code
94720
Zhang, Rui; LaFrance, Benjamin; Nogales, Eva (2018) Separating the effects of nucleotide and EB binding on microtubule structure. Proc Natl Acad Sci U S A 115:E6191-E6200
Nogales, Eva (2018) Cytoskeleton in high resolution. Nat Rev Mol Cell Biol 19:142
Downing, Kenneth H; Glaeser, Robert M (2018) Estimating the effect of finite depth of field in single-particle cryo-EM. Ultramicroscopy 184:94-99
Nogales, Eva (2018) Cryo-EM. Curr Biol 28:R1127-R1128
Sazzed, Salim; Song, Junha; Kovacs, Julio A et al. (2018) Tracing Actin Filament Bundles in Three-Dimensional Electron Tomography Density Maps of Hair Cell Stereocilia. Molecules 23:
Kamennaya, Nina A; Zemla, Marcin; Mahoney, Laura et al. (2018) High pCO2-induced exopolysaccharide-rich ballasted aggregates of planktonic cyanobacteria could explain Paleoproterozoic carbon burial. Nat Commun 9:2116
Howes, Stuart C; Geyer, Elisabeth A; LaFrance, Benjamin et al. (2018) Structural and functional differences between porcine brain and budding yeast microtubules. Cell Cycle 17:278-287
Glaeser, Robert M (2018) PROTEINS, INTERFACES, AND CRYO-EM GRIDS. Curr Opin Colloid Interface Sci 34:1-8
Kellogg, Elizabeth H; Hejab, Nisreen M A; Poepsel, Simon et al. (2018) Near-atomic model of microtubule-tau interactions. Science 360:1242-1246
Hurley, James H; Young, Lindsey N (2017) Mechanisms of Autophagy Initiation. Annu Rev Biochem 86:225-244

Showing the most recent 10 out of 136 publications