The goal of the Molecular Biology Core is to maintain different yeast artificial chromosome (YAC) libraries and to provide the reagents which will be used by all projects. The program will acquire the 400 kb CEPH YAC library from Dr. David Housman's laboratory at MIT. The program is expected to receive the newly constructed large insert YAC libraries from CEPH. Most importantly, we will receive a chromosome 12 specific sublibrary that will be generated by CEPH. This library which is the key reagent for the proposed program will be the initial focus of attention for the Molecular Biology Core. DNA from each member of this approximately 1,000 member library will be prepared and some of it will be arrayed on nylon membranes. The purified DNA will be provided to Project 1 and the membranes will be provided to Projects 2 and 3. A second objective of this core is to oversee the preparation of oligonucleotide primers which will define sequence tagged sites for the physical mapping effort. Nearly 500 pairs of oligonucleotides need to be synthesized per year and the core will evaluate their quality. Finally, the core will be responsible for maintaining the different reagents that the project is receiving and generating. The core will also evaluate the most appropriate strategies for timely distribution of the mapping reagents which the program project will generate and the genes that it will identify.

Agency
National Institute of Health (NIH)
Institute
National Human Genome Research Institute (NHGRI)
Type
Research Program Projects (P01)
Project #
5P01HG000965-03
Application #
6296841
Study Section
Project Start
1995-09-01
Project End
2000-06-30
Budget Start
1997-10-01
Budget End
1998-09-30
Support Year
3
Fiscal Year
1995
Total Cost
Indirect Cost
Name
Albert Einstein College of Medicine
Department
Type
DUNS #
009095365
City
Bronx
State
NY
Country
United States
Zip Code
10461
Basson, C T; Bachinsky, D R; Lin, R C et al. (1997) Mutations in human TBX5 [corrected] cause limb and cardiac malformation in Holt-Oram syndrome. Nat Genet 15:30-5
Renault, B; Hovnanian, A; Bryce, S et al. (1997) A sequence-ready physical map of a region of 12q24.1. Genomics 45:271-8
Nadkarni, P M (1997) Concept locator: a client-server application for retrieval of UMLS metathesaurus concepts through complex boolean query. Comput Biomed Res 30:323-36
Merscher, S; Marondel, I; Pedeutour, F et al. (1997) Identification of new translocation breakpoints at 12q13 in lipomas. Genomics 46:70-7
Nadkarni, P M (1997) QAV: querying entity-attribute-value metadata in a biomedical database. Comput Methods Programs Biomed 53:93-103
Nadkarni, P M (1997) Mapdiff: determining differences between two genomic maps. Comput Appl Biosci 13:217-25
Nadkarni, P M; Banks, A; Montgomery, K et al. (1996) CONTIG EXPLORER: interactive marker-content map assembly. Genomics 31:301-10
Marondel, I; Renault, B; Lieman, J et al. (1996) Physical mapping of the human neurotensin gene (NTS) between markers D12S1444 and D12S81 on chromosome 12q21. Genomics 38:243-5
Cupelli, L; Renault, B; Leblanc-Straceski, J et al. (1996) Assignment of the human myogenic factors 5 and 6 (MYF5, MYF6) gene cluster to 12q21 by in situ hybridization and physical mapping of the locus between D12S350 and D12S106. Cytogenet Cell Genet 72:250-1
Schoenberg Fejzo, M; Ashar, H R; Krauter, K S et al. (1996) Translocation breakpoints upstream of the HMGIC gene in uterine leiomyomata suggest dysregulation of this gene by a mechanism different from that in lipomas. Genes Chromosomes Cancer 17:1-6

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