Core A- the Genomics, Proteomics and Bioinformatics Core The overall goal of Core A is to provide genomics, proteomics and bioinformatics support for P01 investigators. Core A will maintain whole genome and custom DNA microarray platforms to facilitate the gene expression experiments of P01 investigators. Core A will also provide quantitative real-time PCR (qPCR) support for P01 projects. Proteomics activities will be supported within Core A. This will include facilitating yeast two-hybrid screens and preparation of protein samples for Ion Trap Electrospray Mass Spectrometry (IE-MS) to be carried out in the Texas A&M Protein Chemistry Laboratory. Core A will provide robust bioinformatics platform(s) for P01 investigators. Local and distributed servers will be provided for data analysis, storage and archiving. Additional data mining tools will be maintained locally for further gene expression, protein structure, and comparative data analysis. Core A will acquire or develop new technologies to facilitate P01 investigator progress. As new genomics, proteomics and bioinformatics platforms emerge, they will be evaluated by Core A and implemented where appropriate. The research supported by the Genomics, Proteomics and Bioinformatics Core will lead to an understanding of the molecular and biochemical basis of circadian timing and of the systems-level consequences of circadian rhythmicity. This in turn will facilitate the development of new therapies for diseases and conditions related to circadian pathologies.

Agency
National Institute of Health (NIH)
Institute
National Institute of Neurological Disorders and Stroke (NINDS)
Type
Research Program Projects (P01)
Project #
5P01NS039546-08
Application #
7643082
Study Section
National Institute of Neurological Disorders and Stroke Initial Review Group (NSD)
Project Start
Project End
Budget Start
2008-07-01
Budget End
2009-06-30
Support Year
8
Fiscal Year
2008
Total Cost
$159,862
Indirect Cost
Name
Texas A&M University
Department
Type
DUNS #
078592789
City
College Station
State
TX
Country
United States
Zip Code
77845
Li, Ye; Cassone, Vincent M (2015) A simple, specific high-throughput enzyme-linked immunosorbent assay (ELISA) for quantitative determination of melatonin in cell culture medium. Int Immunopharmacol 28:230-4
Li, Ye; Cassone, Vincent M (2015) Clock-Controlled Regulation of the Acute Effects of Norepinephrine on Chick Pineal Melatonin Rhythms. J Biol Rhythms 30:519-32
Nsa, Imade Y; Karunarathna, Nirmala; Liu, Xiaoguang et al. (2015) A novel cryptochrome-dependent oscillator in Neurospora crassa. Genetics 199:233-45
Cassone, Vincent M (2014) Avian circadian organization: a chorus of clocks. Front Neuroendocrinol 35:76-88
Bennett, Lindsay D; Beremand, Phillip; Thomas, Terry L et al. (2013) Circadian activation of the mitogen-activated protein kinase MAK-1 facilitates rhythms in clock-controlled genes in Neurospora crassa. Eukaryot Cell 12:59-69
Wang, Gang; Harpole, Clifford E; Trivedi, Amit K et al. (2012) Circadian regulation of bird song, call, and locomotor behavior by pineal melatonin in the zebra finch. J Biol Rhythms 27:145-55
Lakin-Thomas, Patricia L; Bell-Pedersen, Deborah; Brody, Stuart (2011) The genetics of circadian rhythms in Neurospora. Adv Genet 74:55-103
Shende, Vikram R; Goldrick, Marianna M; Ramani, Suchitra et al. (2011) Expression and rhythmic modulation of circulating microRNAs targeting the clock gene Bmal1 in mice. PLoS One 6:e22586
Ko, Michael L; Shi, Liheng; Tsai, Ju-Yun et al. (2011) Cardiac-specific mutation of Clock alters the quantitative measurements of physical activities without changing behavioral circadian rhythms. J Biol Rhythms 26:412-22
Burkeen, Jeff F; Womac, Alisa D; Earnest, David J et al. (2011) Mitochondrial calcium signaling mediates rhythmic extracellular ATP accumulation in suprachiasmatic nucleus astrocytes. J Neurosci 31:8432-40

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