This Developmental Biology Phase II COBRE Bioinformatics and Pathways Core (BPC) will provide dedicated bioinformatics and statistical support for all Junior Investigators and Pilot Project Investigators. In particular, we will help with processing, quality control, analysis and interpretation of high-throughput sequencing experiments such as RNA-seq, ChIP-seq, and genomic analyses. Additionally, the BPC has a dedicated Ph.D.-level statistician who will provide continuous statistical support, both in the design and interpretation of experiments. We have extensive experience in the effective use of state-of-the-art bioinformatics methods and software, as well as a track record in developing novel methods to help interpret experimental findings. We will also work proactively with the Junior Investigators to identify how informatics approaches can help their research, and develop new informatics resources accordingly. The BPC will help and support COBRE investigators as they submit their grants for independent research funding, both in preparation of the relevant sections on data analysis and statistics, as well as in post-award analyses. The BPC is led by Dr. Jonathan Wren, a bioinformatician with 128 peer-reviewed publications and 14 years of experience, and two Ph.D.-level scientists on staff. Our top priorities are to continue to build our bioinformatics infrastructure to help Junior Investigators and Pilot Project Investigators with data analysis, data interpretation and identification of promising new experimental leads.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Exploratory Grants (P20)
Project #
2P20GM103636-06
Application #
9573335
Study Section
Special Emphasis Panel (ZGM1)
Project Start
Project End
Budget Start
2018-07-01
Budget End
2019-06-30
Support Year
6
Fiscal Year
2018
Total Cost
Indirect Cost
Name
Oklahoma Medical Research Foundation
Department
Type
DUNS #
077333797
City
Oklahoma City
State
OK
Country
United States
Zip Code
73104
Bhaskaran, Shylesh; Pharaoh, Gavin; Ranjit, Rojina et al. (2018) Loss of mitochondrial protease ClpP protects mice from diet-induced obesity and insulin resistance. EMBO Rep 19:
Siefert, Joseph C; Clowdus, Emily A; Goins, Duane et al. (2018) Profiling DNA Replication Timing Using Zebrafish as an In Vivo Model System. J Vis Exp :
Borga, Chiara; Park, Gilseung; Foster, Clay et al. (2018) Simultaneous B and T cell acute lymphoblastic leukemias in zebrafish driven by transgenic MYC: implications for oncogenesis and lymphopoiesis. Leukemia :
Wren, Jonathan D (2018) Algorithmically outsourcing the detection of statistical errors and other problems. EMBO J 37:
Georgescu, Constantin; Wren, Jonathan D (2018) Algorithmic identification of discrepancies between published ratios and their reported confidence intervals and P-values. Bioinformatics 34:1758-1766
Snider, Timothy A; Richardson, Arlan; Stoner, Julie A et al. (2018) The Geropathology Grading Platform demonstrates that mice null for Cu/Zn-superoxide dismutase show accelerated biological aging. Geroscience 40:97-103
Sansam, Courtney G; Pietrzak, Katarzyna; Majchrzycka, Blanka et al. (2018) A mechanism for epigenetic control of DNA replication. Genes Dev 32:224-229
de Castro, Rodrigo O; Previato, Luciana; Goitea, Victor et al. (2017) The chromatin-remodeling subunit Baf200 promotes homology-directed DNA repair and regulates distinct chromatin-remodeling complexes. J Biol Chem 292:8459-8471
Wang, Hong-Cheng; Qian, Liangyue; Zhao, Ying et al. (2017) Downregulation of E Protein Activity Augments an ILC2 Differentiation Program in the Thymus. J Immunol 198:3149-3156
Sun, Chengyi; Berry, William L; Olson, Lorin E (2017) PDGFR? controls the balance of stromal and adipogenic cells during adipose tissue organogenesis. Development 144:83-94

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