This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. While the past few years have witnessed an explosion of activity in mining information embedded in genomic sequences by bioinformatic, transcriptomic and proteomic approaches, the state of metabolomics analysis is in its infancy. In the past couple of years, UNL and UNMC have made significant strides in developing proteomics, microarray and bioinformatics core facilities, which are used by members of the Redox Biology Center (RBC). To support the increasing interest of the research communities at UNL and UNMC in large-scale metabolic profiling systems and to complement the existing facilities for global analysis at the proteomic and transcriptomic levels, we have invested in the mass spectroscopy platforms to support high throughput metabolomics analyses. The metabolomics facility is overseen by Dr. Ashraf Raza, currently he is developing methods for metabolomics, metabolic profiling and metabolic fingerprinting. Current projects includes, identifying and quantitating sulfur containing metabolites in mouse liver cells and tracking changes in arachidonic acid derived metabolites secreted by human monocytes during differentiation to macrophages. Besides these efforts, the mass spectrometry facility is also supporting research on post translational modifications, studying protein structural changes, proteomics and other general applications. The Metabolomics RBC Mass Spec Core Facility is located in the Beadle Center which houses the UNL Core Facilities for Proteomics, Microscopy and Genomics. The new Metabolomics RBC Mass Spec Core Facility occupies approximately 500 sq ft. RBC Mass Spec Core Facility has QStar XL and Qtrap 2000 instruments from Applied Biosystems. This facility has capabilities for doing MS, LCMS, LCMS/MS and LCMS/MS/MS analysis using nano or micro flow rate techniques.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Exploratory Grants (P20)
Project #
5P20RR017675-05
Application #
7381831
Study Section
Special Emphasis Panel (ZRR1-RI-A (02))
Project Start
2006-07-01
Project End
2007-06-30
Budget Start
2006-07-01
Budget End
2007-06-30
Support Year
5
Fiscal Year
2006
Total Cost
$157,748
Indirect Cost
Name
University of Nebraska Lincoln
Department
Biochemistry
Type
Schools of Earth Sciences/Natur
DUNS #
555456995
City
Lincoln
State
NE
Country
United States
Zip Code
68588
Garza-Lombó, Carla; Schroder, Annika; Reyes-Reyes, Elsa M et al. (2018) mTOR/AMPK signaling in the brain: Cell metabolism, proteostasis and survival. Curr Opin Toxicol 8:102-110
Markley, John L; Brüschweiler, Rafael; Edison, Arthur S et al. (2017) The future of NMR-based metabolomics. Curr Opin Biotechnol 43:34-40
Duszenko, Nikolas; Buan, Nicole R (2017) Physiological Evidence for Isopotential Tunneling in the Electron Transport Chain of Methane-Producing Archaea. Appl Environ Microbiol 83:
Anandhan, Annadurai; Jacome, Maria S; Lei, Shulei et al. (2017) Metabolic Dysfunction in Parkinson's Disease: Bioenergetics, Redox Homeostasis and Central Carbon Metabolism. Brain Res Bull 133:12-30
Marshall, Darrell D; Powers, Robert (2017) Beyond the paradigm: Combining mass spectrometry and nuclear magnetic resonance for metabolomics. Prog Nucl Magn Reson Spectrosc 100:1-16
Anandhan, Annadurai; Lei, Shulei; Levytskyy, Roman et al. (2017) Glucose Metabolism and AMPK Signaling Regulate Dopaminergic Cell Death Induced by Gene (?-Synuclein)-Environment (Paraquat) Interactions. Mol Neurobiol 54:3825-3842
Rose, Jordan; Brian, Christian; Woods, Jade et al. (2017) Mitochondrial dysfunction in glial cells: Implications for neuronal homeostasis and survival. Toxicology 391:109-115
Boone, Cory H T; Grove, Ryan A; Adamcova, Dana et al. (2017) Oxidative stress, metabolomics profiling, and mechanism of local anesthetic induced cell death in yeast. Redox Biol 12:139-149
Gebregiworgis, Teklab; Nielsen, Helle H; Massilamany, Chandirasegaran et al. (2016) A Urinary Metabolic Signature for Multiple Sclerosis and Neuromyelitis Optica. J Proteome Res 15:659-66
Navarro-Yepes, Juliana; Anandhan, Annadurai; Bradley, Erin et al. (2016) Inhibition of Protein Ubiquitination by Paraquat and 1-Methyl-4-Phenylpyridinium Impairs Ubiquitin-Dependent Protein Degradation Pathways. Mol Neurobiol 53:5229-51

Showing the most recent 10 out of 177 publications