? FUNCTIONAL GENOMICS SHARED RESOURCE The Functional Genomics (FG) shared resource was a developing shared resource and is being submitted as a new Duke Cancer Institute (DCI) ? CCSG Shared Resource. Functional Genomics supports Duke Cancer Institute investigators by providing a broad range of services to facilitate the application of functional genomics technologies, including CRISPR/Cas9, RNAi- and ORF-based approaches. Through investments in genetic and chemical perturbagen collections and high-throughput screening infrastructure, we have assembled state-of-the-art technological platforms for functional studies in both high-and low-throughput applications. The FG provides expertise and assistance in developing and implementing genetic screens in arrayed or pooled format, as well as custom services for the creation of individual knock-out, knock- in or overexpression experimental models. In addition, FG enables screening of diverse compound collections with either cell-based or biochemical assays for chemical genetic or drug discovery studies. FG also provides access to advanced instrumentation for screen-related or standalone assays, including multimodal plate readers and a high-content screening (HCS) system for image-based analysis. Finally, the FG is dedicated to developing and adapting new functional genomic techniques and reagents to better support the needs of DCI investigators, enabling them to keep pace with the rapidly evolving field of functional genomics. In 2018, Functional Genomics provided services to 60 investigators, 58% of whom were DCI members who accounted for 66% of total usage and represented 7 of the 8 DCI Research Programs. Use of the shared resource by DCI members contributed to 24 publications over the current project period, 11 of which were in high impact journals (Impact Factor>9), demonstrating the value of services offered by this new resource.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Center Core Grants (P30)
Project #
2P30CA014236-46
Application #
9853593
Study Section
Subcommittee I - Transistion to Independence (NCI)
Project Start
Project End
Budget Start
2020-01-01
Budget End
2020-12-31
Support Year
46
Fiscal Year
2020
Total Cost
Indirect Cost
Name
Duke University
Department
Type
DUNS #
044387793
City
Durham
State
NC
Country
United States
Zip Code
27705
Gearhart-Serna, Larisa M; Jayasundara, Nishad; Tacam Jr, Moises et al. (2018) Assessing Cancer Risk Associated with Aquatic Polycyclic Aromatic Hydrocarbon Pollution Reveals Dietary Routes of Exposure and Vulnerable Populations. J Environ Public Health 2018:5610462
Bakthavatsalam, Subha; Sleeper, Mark L; Dharani, Azim et al. (2018) Leveraging ?-Glutamyl Transferase To Direct Cytotoxicity of Copper Dithiocarbamates against Prostate Cancer Cells. Angew Chem Int Ed Engl 57:12780-12784
Dai, Ziwei; Mentch, Samantha J; Gao, Xia et al. (2018) Methionine metabolism influences genomic architecture and gene expression through H3K4me3 peak width. Nat Commun 9:1955
Powell Gray, Bethany; Kelly, Linsley; Ahrens, Douglas P et al. (2018) Tunable cytotoxic aptamer-drug conjugates for the treatment of prostate cancer. Proc Natl Acad Sci U S A 115:4761-4766
Abdi, Khadar; Lai, Chun-Hsiang; Paez-Gonzalez, Patricia et al. (2018) Uncovering inherent cellular plasticity of multiciliated ependyma leading to ventricular wall transformation and hydrocephalus. Nat Commun 9:1655
Hudson, Kathryn E; Rizzieri, David; Thomas, Samantha M et al. (2018) Dose-intense chemoimmunotherapy plus radioimmunotherapy in high-risk diffuse large B-cell lymphoma and mantle cell lymphoma: a phase II study. Br J Haematol :
Fayanju, Oluwadamilola M; Park, Ko Un; Lucci, Anthony (2018) Molecular Genomic Testing for Breast Cancer: Utility for Surgeons. Ann Surg Oncol 25:512-519
Porter, Laura S; Fish, Laura; Steinhauser, Karen (2018) Themes Addressed by Couples With Advanced Cancer During a Communication Skills Training Intervention. J Pain Symptom Manage 56:252-258
Káradóttir, Ragnhildur T; Kuo, Chay T (2018) Neuronal Activity-Dependent Control of Postnatal Neurogenesis and Gliogenesis. Annu Rev Neurosci 41:139-161
Han, Peng; Liu, Hongliang; Shi, Qiong et al. (2018) Associations between expression levels of nucleotide excision repair proteins in lymphoblastoid cells and risk of squamous cell carcinoma of the head and neck. Mol Carcinog 57:784-793

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