The objective of the Bioinformatics Shared Resource (BISR) is to support the application of advanced computational and bioinformatics resources for cancer research conducted by NCCC investigators. The BISR will provide the infrastructure and consultation necessary for the use of computational tools and informatics databases in innovative ways. Specifically, the BISR has as its goals: 1. the advancement of bioinformatics and molecular biological information infrastructure; 2. the provision of leading-edge computational resources to enable solutions to important problems in molecular biology; 3. the education of researchers in bioinformatics; and 4. the assistance of researchers in the exploitation of high performance computing. The BISR is managed by a faculty director, Dr. C. Robertson McClung, and is overseen by an Internal Advisory Committee. The BISR is staffed by three consultants; two doctoral level and one masters level. The Resource staff are available for consultation on experimental design and data analysis. The BISR, in collaboration with Dartmouth Academic Computing, supports an extensive set of software applications that comprehensively address the needs of NCCC investigators in the analysis of organism-scale datasets in the areas of DNA sequence (genome), gene expression (transcriptome), protein expression (proteome), protein structural analysis (with an emphasis on NMR and crystallographic techniques), and small molecules (metabolome). This Resource also collaborates with the Molecular Biology & Proteomics Shared Service and the Microarray Shared Resource in providing seamless support for the investigator who is applying these tools to their research. The addition of these new resources is expected to significantly increase the user base of NCCC investigators.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Center Core Grants (P30)
Project #
5P30CA023108-27
Application #
7063408
Study Section
Subcommittee G - Education (NCI)
Project Start
Project End
Budget Start
2004-12-01
Budget End
2005-11-30
Support Year
27
Fiscal Year
2005
Total Cost
$22,919
Indirect Cost
Name
Dartmouth College
Department
Type
DUNS #
041027822
City
Hanover
State
NH
Country
United States
Zip Code
03755
Soneji, Samir S; Sung, Hai-Yen; Primack, Brian A et al. (2018) Quantifying population-level health benefits and harms of e-cigarette use in the United States. PLoS One 13:e0193328
Durand, Marie-Anne; Yen, Renata West; O'Malley, A James et al. (2018) What matters most: protocol for a randomized controlled trial of breast cancer surgery encounter decision aids across socioeconomic strata. BMC Public Health 18:241
Molodtsov, Aleksey; Turk, Mary Jo (2018) Tissue Resident CD8 Memory T Cell Responses in Cancer and Autoimmunity. Front Immunol 9:2810
Courtney, Andrea L; Rapuano, Kristina M; Sargent, James D et al. (2018) Brain Reward Responses Are Behaviorally Relevant: The Authors Respond. J Stud Alcohol Drugs 79:41-42
Tosteson, Anna N A; Yang, Qian; Nelson, Heidi D et al. (2018) Second opinion strategies in breast pathology: a decision analysis addressing over-treatment, under-treatment, and care costs. Breast Cancer Res Treat 167:195-203
Lin, Anping; Yin, Juan; Cheng, Chao et al. (2018) Decreased expression of FOXA2 promotes eutopic endometrial cell proliferation and migration in patients with endometriosis. Reprod Biomed Online 36:181-187
Elder, David E; Piepkorn, Michael W; Barnhill, Raymond L et al. (2018) Pathologist characteristics associated with accuracy and reproducibility of melanocytic skin lesion interpretation. J Am Acad Dermatol 79:52-59.e5
Rutter, Carolyn M; Kim, Jane J; Meester, Reinier G S et al. (2018) Effect of Time to Diagnostic Testing for Breast, Cervical, and Colorectal Cancer Screening Abnormalities on Screening Efficacy: A Modeling Study. Cancer Epidemiol Biomarkers Prev 27:158-164
Kumar, Nishant; Tafe, Laura J; Higgins, John H et al. (2018) Identifying Associations between Somatic Mutations and Clinicopathologic Findings in Lung Cancer Pathology Reports. Methods Inf Med 57:63-73
Punshon, Tracy; Jackson, Brian P (2018) Essential micronutrient and toxic trace element concentrations in gluten containing and gluten-free foods. Food Chem 252:258-264

Showing the most recent 10 out of 1911 publications