The Bioinformatics Core Facility at the Robert H. Lurie Comprehensive Cancer Center is a new core and is focused oncollaboration and publication with Cancer Center members. The Bioinformatics Core Facility members are defined asindividuals performing bioinformatics, application development or data management activities on cancer projects. TheCore Facility consists of five faculty-level bioinformaticists with an experienced and diverse staff supporting thefundamental activities of the Core. All Core Facility members are faculty or staff in the Robert H. Lurie ComprehensiveCancer Center at Northwestern University Feinberg School of Medicine with two faculty, Kibbe and Lin, also havingappointments in the Center for Genetic Medicine in the Feinberg School of Medicine. For this CCSG renewal, thespecific aims of the Core are to: 1. Provide bioinformatics services and educational opportunities to all Cancer CenterInvestigators. 2. Provide data handling and data services to Cancer Center members and Cores. 3. Provide molecularanalysis services and common analysis platforms to Cancer Center members. 4. Provide computational services toCancer Center members and Cores. 5. Support and enhance NOTIS, the Cancer Center's in house clinical trialsmanagement software. During the usage reporting period 08/01/05 - 07/31/06, the Core worked on at least 35 separateprojects for at least 31 distinct users, 25 who are Center members. The Core has usage in all 10 Cancer Centerprograms and it interacts with several relevant Cores, particularly the Biostatistics Core Facility. The Core alsoparticipated in over 50 grant applications and Core members co-authored over 20 papers during the past five years.Over the next five years, the Core will continue to provide the Cancer Center with bioinformatics and computationalsupport for molecular imaging, genomics, proteomics, clinical trials and clinical informatics. State of the art algorithmsfor pathway analysis, microarray analysis, proteomics, good software development practices, and data handling andcomputational resources will be available to Cancer Center members. Collaboration with the Biostatistics Core willcontinue to be strengthened, as faculty and staff in both Cores further develop their collaborative interests and fundedprojects. The Bioinformatics Core Facility will continue to respond to user requests for participation in grantapplications, expand faculty and staff effort as needed to respond to the changing needs of funded grants, strive tomaintain a revenue profile where funded grants represent the majority revenue sources relative to CCSG andinstitutional funds and strive to maintain the professional level of faculty and staff through their attendance at andparticipation in technical courses, training, and interaction with faculty throughout the institution and the world atconferences and meetings.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Center Core Grants (P30)
Project #
2P30CA060553-14
Application #
7339475
Study Section
Subcommittee G - Education (NCI)
Project Start
2007-08-01
Project End
2012-07-31
Budget Start
2007-08-01
Budget End
2008-07-31
Support Year
14
Fiscal Year
2007
Total Cost
$220,664
Indirect Cost
Name
Northwestern University at Chicago
Department
Type
DUNS #
005436803
City
Chicago
State
IL
Country
United States
Zip Code
60611
Mandelin 2nd, Arthur M; Homan, Philip J; Shaffer, Alexander M et al. (2018) Transcriptional Profiling of Synovial Macrophages Using Minimally Invasive Ultrasound-Guided Synovial Biopsies in Rheumatoid Arthritis. Arthritis Rheumatol 70:841-854
Fong, Lam-Kiu; Wang, Ziwei; Schatz, George C et al. (2018) The Role of Structural Enthalpy in Spherical Nucleic Acid Hybridization. J Am Chem Soc 140:6226-6230
Suraneni, Praveen K; Corey, Seth J; Hession, Michael J et al. (2018) Dynamins 2 and 3 control the migration of human megakaryocytes by regulating CXCR4 surface expression and ITGB1 activity. Blood Adv 2:3540-3552
Yan, M; Lewis, P L; Shah, R N (2018) Tailoring nanostructure and bioactivity of 3D-printable hydrogels with self-assemble peptides amphiphile (PA) for promoting bile duct formation. Biofabrication 10:035010
Edelbrock, Alexandra N; Àlvarez, Zaida; Simkin, Dina et al. (2018) Supramolecular Nanostructure Activates TrkB Receptor Signaling of Neuronal Cells by Mimicking Brain-Derived Neurotrophic Factor. Nano Lett 18:6237-6247
Fisher, Daniel W; Han, Ye; Lyman, Kyle A et al. (2018) HCN channels in the hippocampus regulate active coping behavior. J Neurochem 146:753-766
Sullivan, David P; Bui, Triet; Muller, William A et al. (2018) In vivo imaging reveals unique neutrophil transendothelial migration patterns in inflamed intestines. Mucosal Immunol 11:1571-1581
Russi, Abigail E; Ebel, Mark E; Yang, Yuchen et al. (2018) Male-specific IL-33 expression regulates sex-dimorphic EAE susceptibility. Proc Natl Acad Sci U S A 115:E1520-E1529
Frankowski, Kevin J; Wang, Chen; Patnaik, Samarjit et al. (2018) Metarrestin, a perinucleolar compartment inhibitor, effectively suppresses metastasis. Sci Transl Med 10:
Melo-Cardenas, Johanna; Xu, Yuanming; Wei, Juncheng et al. (2018) USP22 deficiency leads to myeloid leukemia upon oncogenic Kras activation through a PU.1-dependent mechanism. Blood 132:423-434

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