Abstract

- BIOINFORMATICS The Wilmer Eye Institute and Hopkins research community have many research faculty members who conduct basic research projects that require bioinformatics support. A number of these investigators are working together on disease- oriented collaborative projects that are informatics intensive. This is partly because the next generation sequencing is becoming a routine and affordable technique in the laboratories. The bioinformatics core has been providing bioinformatics services to many research labs at Hopkins University Medical School. In this funding cycle, we plan to continue to perform bioinformatics analysis for the projects initiated by the researchers at Johns Hopkins, provide educational bioinformatics course for PIs, postdocs and students, and support the grant applications for the researchers. One new direction we plan to pursue is single cell data analysis, since more and more labs at Hopkins are starting to employ single cell sequencing for their projects. We will also provide bioinformatics seminar series to give tutorials on basic bioinformatics analytic tools, including single cell data analysis.

  Funding Agency

Agency
National Institute of Health (NIH)
Institute
National Eye Institute (NEI)
Type
Center Core Grants (P30)
Project #
2P30EY001765-44
Application #
9795549
Study Section
Special Emphasis Panel (ZEY1)
Project Start
Project End
Budget Start
2019-09-30
Budget End
2020-07-31
Support Year
44
Fiscal Year
2019
Total Cost
Indirect Cost

  Institution

Name
Johns Hopkins University
Department
Type
DUNS #
001910777
City
Baltimore
State
MD
Country
United States
Zip Code
21205

  Publications

Park, Tea Soon; Zimmerlin, Ludovic; Evans-Moses, Rebecca et al. (2018) Chemical Reversion of Conventional Human Pluripotent Stem Cells to a Naïve-like State with Improved Multilineage Differentiation Potency. J Vis Exp :
Hinkle, Jared T; Perepezko, Kate; Bakker, Catherine C et al. (2018) Domain-specific cognitive impairment in non-demented Parkinson's disease psychosis. Int J Geriatr Psychiatry 33:e131-e139
Duncan, Gregg A; Kim, Namho; Colon-Cortes, Yanerys et al. (2018) An Adeno-Associated Viral Vector Capable of Penetrating the Mucus Barrier to Inhaled Gene Therapy. Mol Ther Methods Clin Dev 9:296-304
Long, Da; Kanan, Yogita; Shen, Jikui et al. (2018) VEGF/VEGFR2 blockade does not cause retinal atrophy in AMD-relevant models. JCI Insight 3:
Liu, Melissa M; Cho, Chris; Jefferys, Joan L et al. (2018) Use of Optical Coherence Tomography by Nonexpert Personnel as a Screening Approach for Glaucoma. J Glaucoma 27:64-70
Ebrahimi, Katayoon B; Cano, Marisol; Rhee, John et al. (2018) Oxidative Stress Induces an Interactive Decline in Wnt and Nrf2 Signaling in Degenerating Retinal Pigment Epithelium. Antioxid Redox Signal 29:389-407
Pitha, Ian; Kimball, Elizabeth C; Oglesby, Ericka N et al. (2018) Sustained Dorzolamide Release Prevents Axonal and Retinal Ganglion Cell Loss in a Rat Model of IOP-Glaucoma. Transl Vis Sci Technol 7:13
Sharma, Anjali; Porterfield, Joshua E; Smith, Elizabeth et al. (2018) Effect of mannose targeting of hydroxyl PAMAM dendrimers on cellular and organ biodistribution in a neonatal brain injury model. J Control Release 283:175-189
Kimball, Elizabeth C; Jefferys, Joan L; Pease, Mary E et al. (2018) The effects of age on mitochondria, axonal transport, and axonal degeneration after chronic IOP elevation using a murine ocular explant model. Exp Eye Res 172:78-85
Nesper, Peter L; Lutty, Gerard A; Fawzi, Amani A (2018) RESIDUAL CHOROIDAL VESSELS IN ATROPHY CAN MASQUERADE AS CHOROIDAL NEOVASCULARIZATION ON OPTICAL COHERENCE TOMOGRAPHY ANGIOGRAPHY: Introducing a Clinical and Software Approach. Retina 38:1289-1300

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