Program Director/Principal Investigator (Last, First, Middle): Abstract The Genomics and Bioinformatics Module provides investigators comprehensive next generation sequencing (NextGen) and single cell genomics services for their projects; our services include experimental design, library construction, sequencing production, data analysis, distribution, and storage. Genome biology is one of the most powerful approaches studying complex diseases such as cancer as it enables researchers to gain a complete and global view of the genome. The invention of NextGen sequencing technologies further accelerates the advancement of genome biology by increasing the speed, capacity, and accuracy of DNA sequencing. NextGen sequencing has revolutionized the world of molecular biology, genetics, and genomics by enabling a broad range of applications: mutation detection, gene expression, epigenomics, etc. As an established NextGen sequencing core, we have collaborated with many vision research groups and have obtained excellent results in various types of experiments, such as ChIP-Seq, RNA-Seq, and mutation detections. In addition to these standard experiments, we will work closely with individual groups to develop customized solutions. With extensive experiences in molecular biology, genomics, computation biology, and a strong support from the Human Genome Sequencing Center (HGSC) and Baylor College of Medicine (BCM), the Genomic Core is at a strong position to facilitate the integration of the diverse groups at BCM and bring cutting edge NextGen and single cell genomics technologies to each group at low cost. PHS 398/2590 (Rev. 11/07) Page Continuation Format Page

Public Health Relevance

The Genomics and Bioinformatics Module is a new resource that addresses the increasing need of the vision researchers at Baylor College of Medicine to access the state-of-the art genomic technologies that are not available in individual laboratories and provides critical bioinformatics support in deciphering the vast amount of data. This module will leverage the expertise, technologies, and resources at the BCM Human Genome Sequencing Center (BCM-HGSC), one of the three major genome centers in the US. In addition to providing service, the module will also serve to a key mechanism to introduce cutting edge genomics and single cell technologies to vision researchers. PHS 398/2590 (Rev. 11/07) Page Continuation Format Page

Agency
National Institute of Health (NIH)
Institute
National Eye Institute (NEI)
Type
Center Core Grants (P30)
Project #
2P30EY002520-36
Application #
8935025
Study Section
Special Emphasis Panel (ZEY1)
Project Start
Project End
Budget Start
2015-09-01
Budget End
2016-06-30
Support Year
36
Fiscal Year
2015
Total Cost
Indirect Cost
Name
Baylor College of Medicine
Department
Type
DUNS #
051113330
City
Houston
State
TX
Country
United States
Zip Code
77030
Xiao, Yangyan; de Paiva, Cintia S; Yu, Zhiyuan et al. (2018) Goblet cell-produced retinoic acid suppresses CD86 expression and IL-12 production in bone marrow-derived cells. Int Immunol 30:457-470
Wang, Jun; Zhao, Li; Wang, Xia et al. (2018) GRIPT: a novel case-control analysis method for Mendelian disease gene discovery. Genome Biol 19:203
Wang, Hongxia; Dewell, Richard B; Zhu, Ying et al. (2018) Feedforward Inhibition Conveys Time-Varying Stimulus Information in a Collision Detection Circuit. Curr Biol 28:1509-1521.e3
Zhu, Ying; Dewell, Richard B; Wang, Hongxia et al. (2018) Pre-synaptic Muscarinic Excitation Enhances the Discrimination of Looming Stimuli in a Collision-Detection Neuron. Cell Rep 23:2365-2378
Dewell, Richard Burkett; Gabbiani, Fabrizio (2018) Biophysics of object segmentation in a collision-detecting neuron. Elife 7:
Ko, Byung Yi; Xiao, Yangyan; Barbosa, Flavia L et al. (2018) Goblet cell loss abrogates ocular surface immune tolerance. JCI Insight 3:
Shen, Guofu; Link, Schuyler; Kumar, Sandeep et al. (2018) Characterization of Retinal Ganglion Cell and Optic Nerve Phenotypes Caused by Sustained Intracranial Pressure Elevation in Mice. Sci Rep 8:2856
Eblimit, Aiden; Agrawal, Smriti Akshay; Thomas, Kandace et al. (2018) Conditional loss of Spata7 in photoreceptors causes progressive retinal degeneration in mice. Exp Eye Res 166:120-130
Denfield, George H; Ecker, Alexander S; Shinn, Tori J et al. (2018) Attentional fluctuations induce shared variability in macaque primary visual cortex. Nat Commun 9:2654
Wang, Changjun; Zaheer, Mahira; Bian, Fang et al. (2018) Sjögren-Like Lacrimal Keratoconjunctivitis in Germ-Free Mice. Int J Mol Sci 19:

Showing the most recent 10 out of 349 publications