We have continued to improve our 3-D visualization software, IMOD. Our main emphasis recently has been on fixing bugs and on improving the model display portion of the software, to facilitate our analysis of very large models, such as those of the Golgi complex. For example, the ability to save a set of views of the model has been significantly enhanced by including the properties of the individual objects in the saved information. Relevant properties include color and lighting characteristics, the position of a clipping plane, and whether the object is on or off. A wide range of displays including different color or lighting schemes and different subsets of the objects can thus be saved as part of a single model file, obviating the need to save multiple copies of a large model and making it easy to switch between and edit these views. A minor version update (Imod 2.10) incorporating these recent changes was released on our web site in July. There continues to be strong interest in this software. An analysis of our web server records shows that from October 10, 1997 to August 24, 1998 (10.5 months), the software was downloaded to 98 distinct sites. Most sites obtained the version for SGI computers but 24 obtained a version that runs on Sun computers. We also provide source code to non-profit groups upon request (3 groups so far in 1998).
Giddings Jr, Thomas H; Morphew, Mary K; McIntosh, J Richard (2017) Preparing Fission Yeast for Electron Microscopy. Cold Spring Harb Protoc 2017: |
Zhao, Xiaowei; Schwartz, Cindi L; Pierson, Jason et al. (2017) Three-Dimensional Structure of the Ultraoligotrophic Marine Bacterium ""Candidatus Pelagibacter ubique"". Appl Environ Microbiol 83: |
Brown, Joanna R; Schwartz, Cindi L; Heumann, John M et al. (2016) A detailed look at the cytoskeletal architecture of the Giardia lamblia ventral disc. J Struct Biol 194:38-48 |
Saheki, Yasunori; Bian, Xin; Schauder, Curtis M et al. (2016) Control of plasma membrane lipid homeostasis by the extended synaptotagmins. Nat Cell Biol 18:504-15 |
Höög, Johanna L; Lacomble, Sylvain; Bouchet-Marquis, Cedric et al. (2016) 3D Architecture of the Trypanosoma brucei Flagella Connector, a Mobile Transmembrane Junction. PLoS Negl Trop Dis 10:e0004312 |
Park, J Genevieve; Palmer, Amy E (2015) Properties and use of genetically encoded FRET sensors for cytosolic and organellar Ca2+ measurements. Cold Spring Harb Protoc 2015:pdb.top066043 |
McCoy, Kelsey M; Tubman, Emily S; Claas, Allison et al. (2015) Physical limits on kinesin-5-mediated chromosome congression in the smallest mitotic spindles. Mol Biol Cell 26:3999-4014 |
Höög, Johanna L; Lötvall, Jan (2015) Diversity of extracellular vesicles in human ejaculates revealed by cryo-electron microscopy. J Extracell Vesicles 4:28680 |
Marc, Robert E; Anderson, James R; Jones, Bryan W et al. (2014) The AII amacrine cell connectome: a dense network hub. Front Neural Circuits 8:104 |
Weber, Britta; Tranfield, Erin M; Höög, Johanna L et al. (2014) Automated stitching of microtubule centerlines across serial electron tomograms. PLoS One 9:e113222 |
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